Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QF117_RS19020 Genome accession   NZ_CP124614
Coordinates   2873960..2874607 (+) Length   215 a.a.
NCBI ID   WP_282387621.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868960..2879607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS19005 (QF117_19005) - 2869313..2870749 (-) 1437 WP_282387616.1 MSHA biogenesis protein MshI -
  QF117_RS19010 (QF117_19010) csrD 2870771..2872771 (-) 2001 WP_282387618.1 RNase E specificity factor CsrD -
  QF117_RS19015 (QF117_19015) ssb 2873115..2873672 (-) 558 WP_017035367.1 single-stranded DNA-binding protein Machinery gene
  QF117_RS19020 (QF117_19020) qstR 2873960..2874607 (+) 648 WP_282387621.1 LuxR C-terminal-related transcriptional regulator Regulator
  QF117_RS19025 (QF117_19025) galU 2874725..2875597 (+) 873 WP_282387623.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QF117_RS19030 (QF117_19030) uvrA 2875793..2878615 (+) 2823 WP_282387625.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25165.87 Da        Isoelectric Point: 8.8275

>NTDB_id=826789 QF117_RS19020 WP_282387621.1 2873960..2874607(+) (qstR) [Vibrio sp. YMD68]
MKKADYTRTVYFLCEDKHADYPYISRLETDLSLDLPKIEPNDLLEANPKHRHKILLIDYQTHKQLQQQVRNLPITDKNFE
VIIFNLNKRLTTDELLYFGNLKGLFYTYTNVEDIVRGLGEIINGQNWLPRKVTSQLLHYYRHVLNSNTAPVIVDLTSREL
QILRCLQDNSSNIQIADSLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNLAS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=826789 QF117_RS19020 WP_282387621.1 2873960..2874607(+) (qstR) [Vibrio sp. YMD68]
ATGAAAAAAGCAGATTACACTCGAACCGTTTATTTTTTATGTGAAGATAAACATGCAGACTATCCTTACATCAGTCGACT
AGAGACTGATCTATCATTAGATCTTCCAAAAATAGAGCCCAACGATTTGCTCGAAGCCAACCCCAAACATCGACATAAGA
TTTTACTGATCGATTACCAAACGCATAAACAACTTCAACAGCAAGTTCGTAATTTACCCATTACAGATAAGAACTTTGAA
GTGATTATTTTTAACCTCAATAAACGGCTTACGACCGACGAATTGCTCTACTTTGGCAACCTAAAAGGGTTATTTTACAC
TTACACAAATGTCGAAGATATTGTTCGAGGGCTTGGAGAAATCATTAATGGGCAAAACTGGCTCCCTCGAAAGGTCACAA
GCCAACTGCTGCACTATTATCGTCATGTGCTTAACAGCAACACCGCTCCTGTGATCGTTGACTTAACCTCTCGTGAACTG
CAGATATTGCGCTGCCTTCAAGATAATTCATCCAATATTCAAATTGCTGATAGCCTATTCATTAGTGAATTTACGGTAAA
ATCACATCTTTATCAGATTTTTAAAAAACTCTCTGTTAAAAATCGAGTGCAGGCGATAGCATGGGCAAATCAAAATTTAG
CGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

61.395

100

0.614
  qstR Vibrio parahaemolyticus RIMD 2210633

60.185

100

0.605
  qstR Vibrio cholerae strain A1552

57.746

99.07

0.572