Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QF117_RS11775 Genome accession   NZ_CP124614
Coordinates   1224087..1224377 (+) Length   96 a.a.
NCBI ID   WP_282389093.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219087..1229377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS11760 (QF117_11760) lon 1219106..1221466 (+) 2361 WP_282389091.1 endopeptidase La -
  QF117_RS11765 (QF117_11765) - 1221648..1221920 (+) 273 WP_017033951.1 HU family DNA-binding protein -
  QF117_RS11770 (QF117_11770) ppiD 1222095..1223951 (+) 1857 WP_282389092.1 peptidylprolyl isomerase -
  QF117_RS11775 (QF117_11775) comEA 1224087..1224377 (+) 291 WP_282389093.1 helix-hairpin-helix domain-containing protein Machinery gene
  QF117_RS11780 (QF117_11780) cmk 1224541..1225221 (+) 681 WP_282389094.1 (d)CMP kinase -
  QF117_RS11785 (QF117_11785) rpsA 1225331..1227001 (+) 1671 WP_282389095.1 30S ribosomal protein S1 -
  QF117_RS11790 (QF117_11790) ihfB 1227123..1227404 (+) 282 WP_282389096.1 integration host factor subunit beta -
  QF117_RS11795 (QF117_11795) - 1227547..1227822 (+) 276 WP_282389097.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QF117_RS11800 (QF117_11800) lapB 1227841..1229010 (+) 1170 WP_017033723.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10464.28 Da        Isoelectric Point: 7.0093

>NTDB_id=826773 QF117_RS11775 WP_282389093.1 1224087..1224377(+) (comEA) [Vibrio sp. YMD68]
MFIKSIILSILLAVFPFTHAVASDSSKYEGIEVTVNINQAPAEELATLLIGVGLKKAQAIVDYRSEYGEFKAIDDLVKVK
GIGASILDKNRTRILL

Nucleotide


Download         Length: 291 bp        

>NTDB_id=826773 QF117_RS11775 WP_282389093.1 1224087..1224377(+) (comEA) [Vibrio sp. YMD68]
ATGTTTATAAAATCCATTATTTTATCCATACTACTTGCCGTATTTCCATTTACCCACGCAGTTGCTTCTGATTCCTCAAA
ATACGAAGGTATTGAAGTCACCGTCAATATTAATCAAGCCCCGGCAGAAGAGCTGGCGACGTTACTTATCGGCGTAGGTT
TAAAGAAAGCGCAAGCCATTGTTGATTACCGTTCAGAATATGGCGAGTTCAAAGCGATTGATGATCTCGTTAAGGTAAAA
GGAATTGGGGCTTCAATTTTGGATAAAAACCGAACACGTATCTTATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

58.242

94.792

0.552
  comEA Vibrio cholerae C6706

53.608

100

0.542
  comEA Vibrio cholerae strain A1552

53.608

100

0.542
  comEA Vibrio campbellii strain DS40M4

53.684

98.958

0.531
  comEA Acinetobacter baylyi ADP1

51.948

80.208

0.417