Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QF117_RS06045 Genome accession   NZ_CP124614
Coordinates   22866..24389 (+) Length   507 a.a.
NCBI ID   WP_282388196.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17866..29389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS06030 (QF117_06030) - 19469..20434 (-) 966 WP_282388193.1 branched-chain amino acid transaminase -
  QF117_RS06035 (QF117_06035) ilvM 20446..20730 (-) 285 WP_282388194.1 acetolactate synthase 2 small subunit -
  QF117_RS06040 (QF117_06040) ilvG 20730..22376 (-) 1647 WP_282388195.1 acetolactate synthase 2 catalytic subunit -
  QF117_RS06045 (QF117_06045) comM 22866..24389 (+) 1524 WP_282388196.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QF117_RS06050 (QF117_06050) - 24510..25466 (-) 957 WP_282388197.1 DUF2860 domain-containing protein -
  QF117_RS06055 (QF117_06055) - 25598..26197 (-) 600 WP_282388198.1 thiol:disulfide interchange protein DsbA/DsbL -
  QF117_RS06060 (QF117_06060) - 26234..27220 (-) 987 WP_282388199.1 serine/threonine protein kinase -
  QF117_RS06065 (QF117_06065) ccoG 27278..28696 (-) 1419 WP_282388200.1 cytochrome c oxidase accessory protein CcoG -
  QF117_RS06070 (QF117_06070) - 29043..29309 (-) 267 WP_282388201.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55391.03 Da        Isoelectric Point: 8.3846

>NTDB_id=826758 QF117_RS06045 WP_282388196.1 22866..24389(+) (comM) [Vibrio sp. YMD68]
MGLAIVHSRASVGVEAPEVTVEVHISNGLPGFSLVGLPETTVKEAKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAACEQIPIDKLTQREFIGELALSGELRAIKGVLPAALAANKAKRCLIVPHLNGDQAALVGKETHKSAQSL
LEVCAELCGQQPLQLFQTKAKFSEAKLTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSV
NEAMETASVASLTQQEINEYNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSHTRTNPQLILRYLSRLSGPLLDRFDMSIEIPVLPKGVLTEGGDR
GEPTEVVKQRVKIARERMCERSGVVNALLGSRDIDQYCPLEKVDAQFLETALHRLGLSIRAYHRIIKVARTIADLDGAER
IEKPHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=826758 QF117_RS06045 WP_282388196.1 22866..24389(+) (comM) [Vibrio sp. YMD68]
ATGGGGTTAGCCATCGTTCATAGTCGCGCGAGTGTAGGTGTTGAAGCACCTGAGGTGACGGTAGAAGTTCATATCAGTAA
TGGGTTGCCAGGATTTAGCTTGGTTGGGTTGCCTGAAACCACGGTCAAAGAAGCAAAAGATCGTGTTCGCAGTGCCATTA
TTAATTCTCGATTTGAGTTCCCAGCAAAGCGGATTACGGTCAATTTGGCACCAGCAGATTTACCTAAAGAAGGCGGCCGA
TTTGATCTCCCTATTGCGCTGGGTATCTTGGCGGCGTGTGAGCAGATTCCAATTGATAAGTTAACGCAGCGAGAGTTTAT
CGGTGAGCTGGCGTTGTCAGGGGAGCTACGCGCAATTAAAGGGGTTCTTCCTGCTGCTCTTGCTGCCAATAAAGCGAAGC
GATGTCTTATTGTTCCGCATTTAAATGGGGATCAAGCCGCATTAGTCGGGAAAGAAACCCATAAGTCGGCACAAAGCTTA
TTGGAAGTGTGTGCGGAACTGTGTGGGCAACAGCCACTGCAACTTTTTCAAACCAAAGCCAAGTTCAGTGAGGCTAAGTT
AACTCGTGATCTGCAAGATATTATTGGCCAGCAGCAAGGAAAGCGCGCGTTAGAGATTGCCGCTGCGGGAAACCACAATT
TGCTTTTTTTGGGGCCACCTGGAACCGGAAAAACCATGCTGGCGTCTCGGCTGTGTGATTTACTGCCTGAAATGTCGGTT
AATGAAGCGATGGAAACGGCTTCGGTTGCGTCTTTAACTCAACAAGAAATCAATGAGTACAACTGGAAAAAGAGGCCGTT
TCGCTCGCCTCATCATTCAAGCTCGATGGCGGCGCTCGTCGGTGGCGGGTCGATTCCTCGACCCGGAGAGATTTCTTTAG
CCCATAACGGGCTGCTCTTTTTGGATGAAATGCCTGAGTTTGAGAGAAAAGTCCTCGATTCGTTAAGAGAGCCGTTAGAG
TCGGGTGAAATTGTGATTTCTCGCGCTCAAGGGAAAACCCGTTTCCCGGCTCGCTTTCAATTGGTCGGAGCCTTAAACCC
AAGCCCGACGGGTTATTACGAGGGAAGTCATACGCGTACCAATCCTCAATTGATTTTGCGCTATTTGAGTCGACTTTCTG
GTCCACTGCTTGATCGGTTTGATATGTCGATAGAAATTCCGGTGCTACCCAAAGGCGTTCTGACAGAAGGTGGAGACAGA
GGAGAACCTACTGAGGTGGTAAAACAACGAGTGAAAATCGCCAGAGAGAGAATGTGTGAGCGAAGTGGCGTGGTTAACGC
GCTGCTTGGTAGCCGAGATATCGATCAATATTGCCCGTTGGAAAAAGTCGATGCTCAGTTTTTAGAAACTGCTTTGCATC
GCCTTGGCCTTTCTATTCGTGCTTATCATCGGATCATTAAGGTCGCTCGAACCATTGCCGATCTCGACGGCGCAGAGAGA
ATAGAGAAGCCTCACTTAGCAGAGGCGCTTGGGTACCGAGCGATGGATCGATTGTTAAAGCAACTGACCTTACAAGCAGT
CTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

65.748

100

0.659
  comM Glaesserella parasuis strain SC1401

65.089

100

0.651
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.44