Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QJV49_RS03645 Genome accession   NZ_CP124538
Coordinates   766737..767732 (-) Length   331 a.a.
NCBI ID   WP_225511966.1    Uniprot ID   A0AA49EXG1
Organism   Lactococcus sp. NH2-7C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761737..772732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS03630 (QJV49_03630) - 763103..764029 (-) 927 WP_058205148.1 peptidyl-prolyl cis-trans isomerase -
  QJV49_RS03635 (QJV49_03635) - 764182..764865 (-) 684 WP_225511968.1 O-methyltransferase -
  QJV49_RS03640 (QJV49_03640) pepF 764868..766673 (-) 1806 WP_225511967.1 oligoendopeptidase F Regulator
  QJV49_RS03645 (QJV49_03645) coiA 766737..767732 (-) 996 WP_225511966.1 competence protein CoiA Machinery gene
  QJV49_RS03650 (QJV49_03650) - 767807..768889 (-) 1083 WP_225511965.1 YdcF family protein -
  QJV49_RS03655 (QJV49_03655) - 769051..769899 (-) 849 WP_225511964.1 alpha/beta hydrolase -
  QJV49_RS03660 (QJV49_03660) - 770093..771514 (-) 1422 WP_225511963.1 NCS2 family permease -
  QJV49_RS03665 (QJV49_03665) - 771821..772657 (+) 837 WP_225511962.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 39886.56 Da        Isoelectric Point: 9.5101

>NTDB_id=826316 QJV49_RS03645 WP_225511966.1 766737..767732(-) (coiA) [Lactococcus sp. NH2-7C]
MLTAIDENKKIVNLLEIDVKKLTGKYFCPFCKSELFIKNGEIKIPHFAHKSLKSCDLWTENESEQHLGLKKIFYQWFKKT
DRVEIERYLPELNQRPDLLVNDKIAIEIQCSHLPIKRLKERTENYQSHGYVVIWLMGKDLWLKDQITKLQRHLVYFSENR
GFYYWELDFKAQKLRLKSLIHEDLRGKIIYLQEEISFGQGRLIECLRLPFLSQKLLTIPLIVDDKLPDFIRQQLYYCSPK
WLKLQEKYYQRGKNLLNLTFERSFIAPLGLNLLEVFDEEIPLHKFTQIKQNINLYYENFLINFQQNSSEAVYPPRFYAIM
KKQNKDKNKYK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=826316 QJV49_RS03645 WP_225511966.1 766737..767732(-) (coiA) [Lactococcus sp. NH2-7C]
ATGCTGACAGCAATTGACGAAAATAAAAAAATAGTAAACTTATTAGAAATAGATGTAAAAAAACTGACAGGGAAATATTT
TTGTCCCTTCTGTAAATCAGAATTATTTATAAAAAATGGTGAAATAAAAATTCCTCACTTTGCTCATAAATCTTTAAAAA
GTTGTGACTTATGGACTGAAAACGAATCTGAACAACATTTGGGATTAAAAAAAATATTTTATCAATGGTTTAAAAAAACT
GACAGGGTTGAAATTGAAAGATACCTTCCTGAGCTCAATCAAAGACCAGATTTATTAGTAAATGACAAAATAGCTATTGA
AATCCAATGCTCCCATCTTCCGATAAAACGTCTAAAAGAAAGAACAGAAAACTACCAAAGTCATGGTTATGTAGTGATTT
GGCTAATGGGCAAGGACTTATGGCTAAAAGATCAAATAACGAAACTTCAAAGGCATTTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTACTGGGAGTTAGATTTCAAAGCTCAGAAGCTGAGATTGAAATCACTAATTCATGAAGATTTGCGTGGGAA
AATTATTTATTTACAAGAAGAAATTTCTTTTGGGCAAGGACGACTTATTGAATGTTTAAGACTCCCTTTTTTATCACAAA
AGTTACTAACAATACCACTTATTGTTGATGATAAACTACCAGATTTTATTCGTCAGCAACTTTATTATTGTTCCCCAAAA
TGGCTAAAACTTCAGGAAAAATATTATCAAAGAGGTAAAAATTTATTGAATTTGACATTTGAGCGTTCATTTATTGCTCC
TTTAGGTTTAAATTTACTTGAAGTTTTTGATGAAGAAATTCCATTACATAAATTTACACAGATTAAGCAGAACATTAATC
TTTATTATGAAAATTTTTTAATAAATTTTCAACAAAATAGCTCTGAGGCAGTCTATCCTCCACGTTTCTATGCTATAATG
AAAAAGCAGAATAAGGATAAAAATAAGTATAAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.229

98.792

0.743
  coiA Streptococcus mitis NCTC 12261

44.72

97.281

0.435
  coiA Streptococcus pneumoniae TIGR4

44.41

97.281

0.432
  coiA Streptococcus pneumoniae Rx1

44.41

97.281

0.432
  coiA Streptococcus pneumoniae D39

44.41

97.281

0.432
  coiA Streptococcus pneumoniae R6

44.41

97.281

0.432