Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QJV49_RS03640 Genome accession   NZ_CP124538
Coordinates   764868..766673 (-) Length   601 a.a.
NCBI ID   WP_225511967.1    Uniprot ID   A0AA49EXJ6
Organism   Lactococcus sp. NH2-7C     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 759868..771673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS03625 (QJV49_03625) alaS 760219..762837 (-) 2619 WP_225511969.1 alanine--tRNA ligase -
  QJV49_RS03630 (QJV49_03630) - 763103..764029 (-) 927 WP_058205148.1 peptidyl-prolyl cis-trans isomerase -
  QJV49_RS03635 (QJV49_03635) - 764182..764865 (-) 684 WP_225511968.1 O-methyltransferase -
  QJV49_RS03640 (QJV49_03640) pepF 764868..766673 (-) 1806 WP_225511967.1 oligoendopeptidase F Regulator
  QJV49_RS03645 (QJV49_03645) coiA 766737..767732 (-) 996 WP_225511966.1 competence protein CoiA Machinery gene
  QJV49_RS03650 (QJV49_03650) - 767807..768889 (-) 1083 WP_225511965.1 YdcF family protein -
  QJV49_RS03655 (QJV49_03655) - 769051..769899 (-) 849 WP_225511964.1 alpha/beta hydrolase -
  QJV49_RS03660 (QJV49_03660) - 770093..771514 (-) 1422 WP_225511963.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70125.03 Da        Isoelectric Point: 5.1155

>NTDB_id=826315 QJV49_RS03640 WP_225511967.1 764868..766673(-) (pepF) [Lactococcus sp. NH2-7C]
MAKNRNEIPEKLTWDLTTIYKTDKEWEADLVKIKSELSLVGEADRGHLLDSAESLLTITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGETYAFYEPEFLKITKESYNKWLKSLQKLKKYDHMFERLFAKKEHILSQKEEKIVAS
AGEIFESPSEIFEIFDNADIKLPMVKNESNEMIQLTHGNYSSLMESKNREVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRSYDSAREAALANNFVPEKVYDVLMEAVHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKEKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKNDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLTAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=826315 QJV49_RS03640 WP_225511967.1 764868..766673(-) (pepF) [Lactococcus sp. NH2-7C]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACGACAATTTATAAAACGGATAAAGAATGGGA
AGCAGATCTAGTAAAAATAAAAAGTGAACTTTCACTCGTTGGAGAAGCAGATCGTGGGCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACTGAAAAAATGTTATCTATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GATCAAGATACACGAGAAGCTAAATATCAAGAATATCAATCAAAAGCGACTGCTCTTTATGTAAAATTTGGAGAAACATA
TGCCTTTTATGAACCTGAATTTTTGAAAATCACAAAAGAATCATATAACAAATGGCTGAAATCACTTCAAAAATTGAAAA
AATATGACCATATGTTTGAACGATTATTTGCTAAAAAAGAGCATATCCTTAGCCAAAAAGAAGAAAAAATAGTGGCTTCC
GCTGGTGAAATTTTTGAAAGTCCATCAGAAATTTTTGAAATTTTTGACAATGCAGATATTAAGTTGCCTATGGTCAAAAA
TGAATCGAATGAGATGATTCAACTCACACACGGAAATTACTCCTCTCTCATGGAAAGTAAAAATAGAGAAGTGCGAAAAG
CAGCTTACAAAGCACTTTACAGTAATTATGAACAATATCAACATACTTATGCAAAAACTTTGCAGACCAATGTGAAAGTT
CATAATTTTAATGCCCAAATCCGTTCTTATGATTCAGCTCGTGAAGCTGCTTTAGCTAATAACTTTGTTCCAGAAAAAGT
TTATGATGTTTTGATGGAAGCTGTTCATCAACATTTACCACTTTTACATCGCTATATTGAACTACGCAAGAAAATTTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACCACAAATGAAAATATTTTAACTGA
GACTTTATTAAAGGAAAGTAAAAATGATAAAGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAG
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAACAGCCAAAGAAAATCCAGAAATTCAATATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTAGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.394

100

0.634