Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QJS82_RS12400 Genome accession   NZ_CP124526
Coordinates   2907875..2909434 (+) Length   519 a.a.
NCBI ID   WP_281490695.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2902875..2914434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS12390 (QJS82_12390) hemN 2903271..2904815 (-) 1545 WP_281490693.1 oxygen-independent coproporphyrinogen III oxidase -
  QJS82_RS12395 (QJS82_12395) - 2904999..2907494 (-) 2496 WP_281490694.1 penicillin acylase family protein -
  QJS82_RS12400 (QJS82_12400) comM 2907875..2909434 (+) 1560 WP_281490695.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QJS82_RS12405 (QJS82_12405) - 2909447..2910139 (-) 693 WP_281490696.1 phosphoglycolate phosphatase -
  QJS82_RS12410 (QJS82_12410) - 2910241..2910741 (-) 501 WP_281490697.1 DUF4385 domain-containing protein -
  QJS82_RS12420 (QJS82_12420) - 2911135..2911557 (-) 423 WP_201620161.1 hypothetical protein -
  QJS82_RS12425 (QJS82_12425) hisB 2911945..2912619 (+) 675 WP_271133658.1 imidazoleglycerol-phosphate dehydratase HisB -
  QJS82_RS12430 (QJS82_12430) - 2912674..2913234 (+) 561 WP_281490698.1 cysteine hydrolase family protein -
  QJS82_RS12435 (QJS82_12435) hisH 2913321..2913956 (+) 636 WP_281491728.1 imidazole glycerol phosphate synthase subunit HisH -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 56082.00 Da        Isoelectric Point: 6.9657

>NTDB_id=826224 QJS82_RS12400 WP_281490695.1 2907875..2909434(+) (comM) [Psychrobacter sp. WB2]
MSFAQVYTRSVVGLHAPQVIIEVHLSQGLPALTIVGLPAAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQLEPEVLSGFEFIGELALNGELRQVSGSLAVARAMKAESIVAKSVIADEQEPRQLQQLRQLIVPID
NGAEASRVEGIEILGAQSLKAVCDHLQSLADPSVITERLEIVTPSPAQQHIGYQVDLADVKGQHHARRALEIAAAGGHSL
LFTGPPGSGKTLMASRLPTILPDLSDEDALEVASTYSVADSDYDYGTRPFRQVHHTISAVALVGGGSRPKPGEITLANKG
VLFLDELPEFDRTVLEVLRQPLEAKQITISRANSQLTFPANFQLVAAMNPCPCGYDGDGSGRCRCRPEQIKRYQDKLSGP
LLDRIDLHITVPALPIADLQNAQAGETSAQVRIRVSAAHKQQLKRQKKVNNELSPSEIDKYIQLGAGEQQLLQLAQQRLN
LSARGYHRVLRVARTIADLADSIDITSAHVSEALSYRSK

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=826224 QJS82_RS12400 WP_281490695.1 2907875..2909434(+) (comM) [Psychrobacter sp. WB2]
ATGTCGTTTGCCCAAGTTTATACGCGCTCAGTCGTCGGACTGCATGCCCCGCAGGTCATTATCGAGGTGCATTTATCACA
AGGCTTGCCAGCATTAACCATTGTCGGTTTGCCTGCTGCTGCCGTACGTGAAAGTAAAGATAGGGTGCGCTCGGCGATTT
TGAATTCGGGCTTTCAATTCCCTAATCGCCGCTTGACGATTAATTTAGCACCAGCAGACTTGCCAAAAGATGGTGCAAGG
CTAGATTTGCCGATTGCCATCGGTATTTTAGCGGCAAGCGGGCAACTTGAGCCAGAAGTACTGTCAGGGTTTGAGTTTAT
CGGCGAGTTGGCGCTCAATGGCGAGCTGCGGCAGGTAAGTGGTAGCTTGGCGGTTGCACGGGCAATGAAAGCAGAGTCAA
TAGTGGCAAAGTCTGTAATAGCTGACGAACAAGAGCCGCGCCAGTTACAGCAATTACGGCAATTAATAGTACCGATTGAT
AATGGCGCGGAAGCCAGCCGTGTTGAAGGCATTGAGATATTAGGCGCTCAAAGTCTAAAAGCCGTTTGTGACCACTTACA
ATCGTTAGCTGACCCAAGCGTAATCACTGAGAGACTGGAGATAGTCACGCCCAGTCCGGCGCAGCAGCATATTGGTTATC
AGGTAGATTTGGCGGATGTAAAAGGTCAACATCATGCTAGGCGGGCGTTAGAAATTGCCGCCGCCGGTGGTCATTCACTA
TTATTTACAGGACCACCCGGTTCCGGCAAGACCTTGATGGCGTCACGCCTACCGACTATCTTGCCTGATTTGAGTGATGA
GGACGCGTTAGAAGTTGCCAGTACCTACTCAGTAGCAGACAGCGACTATGATTATGGTACGCGGCCATTTCGCCAAGTTC
ATCATACTATATCAGCTGTTGCTTTGGTCGGTGGTGGTTCTCGTCCCAAACCTGGCGAGATTACCCTTGCCAATAAGGGC
GTTTTATTTTTGGACGAACTACCAGAGTTTGACCGTACGGTGTTAGAAGTTTTGCGTCAGCCGTTGGAAGCCAAGCAAAT
TACCATTAGCCGTGCAAACTCACAGCTTACTTTTCCCGCAAATTTTCAACTGGTGGCGGCGATGAATCCTTGCCCTTGTG
GCTATGATGGCGACGGCTCAGGAAGATGTCGCTGCCGACCGGAGCAAATTAAGCGCTATCAAGATAAGCTATCAGGGCCA
CTGCTTGATCGTATTGATTTGCATATTACCGTGCCAGCACTGCCAATAGCTGATTTACAAAATGCTCAAGCTGGTGAAAC
CTCGGCACAAGTGCGAATTCGAGTCTCTGCTGCGCATAAGCAGCAATTAAAACGCCAAAAAAAGGTTAATAACGAGCTGA
GTCCTAGCGAGATTGATAAATATATCCAGTTAGGCGCGGGCGAGCAGCAGTTATTACAGCTCGCTCAGCAACGTCTTAAT
CTATCTGCCCGTGGTTATCATCGTGTACTACGCGTTGCACGAACGATTGCAGATTTGGCGGACAGTATCGATATTACCAG
CGCTCATGTATCAGAGGCGCTGAGTTATCGTAGTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-416)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(425-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.618

100

0.501
  comM Glaesserella parasuis strain SC1401

49.333

100

0.499
  comM Vibrio cholerae strain A1552

49.042

100

0.493
  comM Vibrio campbellii strain DS40M4

48.184

100

0.486
  comM Legionella pneumophila str. Paris

47.893

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.893

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.505

100

0.432