Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   acsn021_RS06445 Genome accession   NZ_AP023367
Coordinates   1474709..1476547 (+) Length   612 a.a.
NCBI ID   WP_184093000.1    Uniprot ID   -
Organism   Anaerocolumna cellulosilytica strain SN021     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469709..1481547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  acsn021_RS06435 (acsn021_12800) - 1471924..1472445 (+) 522 WP_184092897.1 MarR family winged helix-turn-helix transcriptional regulator -
  acsn021_RS06440 (acsn021_12810) - 1472449..1474695 (+) 2247 WP_184092896.1 ABC transporter ATP-binding protein -
  acsn021_RS06445 (acsn021_12820) rcrQ 1474709..1476547 (+) 1839 WP_184093000.1 ABC transporter ATP-binding protein Regulator
  acsn021_RS06450 (acsn021_12830) - 1476911..1477072 (+) 162 WP_184092895.1 hypothetical protein -
  acsn021_RS06455 (acsn021_12840) - 1477132..1477695 (-) 564 WP_184092894.1 chromate transporter -
  acsn021_RS06460 (acsn021_12850) - 1477698..1478267 (-) 570 WP_184092893.1 chromate transporter -
  acsn021_RS06465 (acsn021_12860) - 1478457..1479326 (+) 870 WP_330601774.1 LysR family transcriptional regulator -
  acsn021_RS06470 (acsn021_12870) - 1479495..1480259 (-) 765 WP_184092891.1 MerR family transcriptional regulator -
  acsn021_RS06475 (acsn021_12880) - 1480494..1481279 (-) 786 WP_184092890.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 68174.82 Da        Isoelectric Point: 8.2508

>NTDB_id=82612 acsn021_RS06445 WP_184093000.1 1474709..1476547(+) (rcrQ) [Anaerocolumna cellulosilytica strain SN021]
MNAGRHRRQSGHMGGPMGGVIEKPKDFKGSMKKLAAYMSKYKIGLLFVVIFAIASTIFNIVGPKILGNATTEIFNGLVKK
INGTGGINFDAIGKTLMILLGLYIISMVFSLIQGFIMTHISQKVTYQFRKDISEKINRMPMNYFETRTHGEVLSRVTNDV
DTLSQNLNQSISQTISSITMIIGVLYMMITISGTMTLVAILTLPLSMGLIGTIIKKSQKYFKEQQEYLGHVNGQVEEVYG
GHNIVKVFNGEKQVVAEFEKANEKLYHSAWKSQFLSGMMQPIMAFVGNIGYVAVSILGGYLTIKNSIEVGDIQSFIQYVR
SFNQPIAQIAQISSQLQQTAAASERVFEFLDEEEEVQYAKNPVKTDNIRSKVEFKHVKFGYNPEKIIINDFSAAVNPGQK
IAIVGPTGAGKTTMVKLLMRFYDVNSGEILIDGHNIKDFNRGELRQMFGMVLQDTWLFNGTIMDNIRYGKEDATDEEVIA
AAKAAHAHHFISTLPDGYQMILNEEASNVSQGQKQLLTIARAILANPKILILDEATSSVDTRTEVRIQKAMDNLMQGRTS
FVIAHRLSTIKDADLILVMKDGDIIEQGNHEELLLQKGFYASLYNSQFEESA

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=82612 acsn021_RS06445 WP_184093000.1 1474709..1476547(+) (rcrQ) [Anaerocolumna cellulosilytica strain SN021]
ATGAATGCAGGCAGACATAGACGACAGAGCGGACATATGGGTGGACCCATGGGAGGTGTCATTGAAAAGCCTAAGGACTT
TAAAGGTTCTATGAAAAAACTTGCTGCCTATATGAGCAAATACAAAATAGGATTATTGTTCGTTGTAATTTTTGCAATCG
CCAGTACTATTTTTAATATTGTGGGACCGAAAATCCTTGGAAATGCTACGACTGAAATCTTTAATGGGCTTGTAAAGAAG
ATTAATGGAACCGGCGGCATTAATTTTGATGCCATTGGCAAAACACTGATGATTCTGTTGGGACTTTATATTATCAGTAT
GGTATTCTCTTTAATACAGGGATTTATCATGACTCATATCTCTCAAAAAGTAACCTATCAGTTTAGAAAAGATATTTCAG
AAAAGATAAATCGTATGCCTATGAATTATTTTGAAACCCGTACCCATGGTGAGGTTCTCTCAAGAGTTACAAATGACGTT
GATACGTTAAGTCAGAACCTAAATCAAAGTATTTCTCAAACGATTAGTTCCATCACTATGATTATCGGTGTACTTTATAT
GATGATTACTATTAGTGGTACCATGACACTGGTAGCAATATTAACCTTGCCTTTATCCATGGGGCTGATTGGAACCATTA
TAAAGAAATCACAAAAATATTTTAAAGAGCAGCAGGAATACTTAGGCCATGTAAATGGTCAGGTGGAAGAAGTATACGGC
GGACATAATATTGTAAAAGTATTCAATGGTGAAAAGCAGGTAGTAGCAGAATTTGAAAAAGCGAATGAAAAGTTATATCA
TTCTGCCTGGAAGTCCCAGTTTTTATCCGGTATGATGCAGCCTATTATGGCGTTCGTAGGAAATATCGGCTATGTGGCAG
TATCCATATTAGGTGGATACCTTACTATTAAAAATTCCATTGAAGTTGGTGATATTCAGTCCTTTATTCAATATGTAAGA
AGCTTTAACCAGCCAATTGCTCAAATTGCCCAGATATCCAGTCAGTTACAGCAGACGGCTGCGGCTTCAGAGCGTGTGTT
TGAATTTCTGGATGAAGAGGAAGAGGTTCAATATGCAAAAAATCCGGTTAAGACAGACAATATTCGGAGTAAAGTGGAAT
TTAAACATGTTAAATTCGGTTACAATCCAGAGAAGATTATTATTAACGATTTCTCTGCAGCTGTAAATCCAGGACAGAAA
ATAGCAATTGTTGGACCAACCGGTGCCGGTAAAACAACCATGGTAAAACTGCTCATGCGTTTTTATGATGTAAATTCCGG
AGAAATTCTCATTGATGGACATAATATTAAGGATTTTAACCGAGGAGAGTTACGGCAGATGTTCGGCATGGTATTGCAGG
ACACATGGCTGTTTAACGGTACCATTATGGACAATATCCGCTACGGAAAAGAAGATGCTACAGATGAAGAGGTAATCGCA
GCTGCAAAAGCGGCACATGCGCATCACTTTATTTCAACTCTGCCGGATGGTTATCAGATGATTTTAAATGAAGAAGCCAG
TAACGTATCTCAGGGACAGAAACAATTATTAACAATAGCGAGGGCAATTCTTGCTAATCCTAAGATTCTGATACTTGATG
AAGCCACCAGCTCAGTTGATACCAGAACGGAAGTAAGAATTCAAAAGGCTATGGATAATTTAATGCAAGGCAGAACTAGC
TTTGTTATTGCCCACAGGCTTTCTACCATTAAAGATGCTGACTTAATTCTGGTTATGAAAGACGGCGATATTATAGAGCA
GGGTAATCACGAAGAACTGCTGCTTCAAAAGGGATTCTATGCTTCCTTGTATAATTCTCAGTTTGAAGAGTCTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(389-537)

ABC transporter transmembrane region (ABC_membrane)

(45-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.37

95.425

0.49

Multiple sequence alignment