Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SE087_RS01945 Genome accession   NZ_CP138360
Coordinates   412162..412665 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A0D1JHQ1
Organism   Staphylococcus aureus strain 17CS1042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 407162..417665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS01915 (SE087_01915) spo0J 408103..408948 (+) 846 WP_319090874.1 ParB/RepB/Spo0J family partition protein Regulator
  SE087_RS01920 (SE087_01920) - 409102..409983 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  SE087_RS01925 (SE087_01925) - 410013..410216 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  SE087_RS01930 (SE087_01930) ychF 410228..411325 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  SE087_RS01935 (SE087_01935) - 411410..411601 (-) 192 WP_001052483.1 hypothetical protein -
  SE087_RS01940 (SE087_01940) rpsF 411845..412141 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  SE087_RS01945 (SE087_01945) ssbA 412162..412665 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SE087_RS01950 (SE087_01950) rpsR 412717..412959 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  SE087_RS01960 (SE087_01960) - 413085..414404 (-) 1320 WP_319096833.1 ISL3-like element IS1181 family transposase -
  SE087_RS01965 (SE087_01965) - 414755..415693 (-) 939 WP_078055966.1 Abi family protein -
  SE087_RS01970 (SE087_01970) - 415744..416446 (-) 703 Protein_390 tyrosine-type recombinase/integrase -
  SE087_RS01975 (SE087_01975) selX 416652..417263 (+) 612 WP_217176192.1 exotoxin beta-grasp domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=824907 SE087_RS01945 WP_000934799.1 412162..412665(+) (ssbA) [Staphylococcus aureus strain 17CS1042]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=824907 SE087_RS01945 WP_000934799.1 412162..412665(+) (ssbA) [Staphylococcus aureus strain 17CS1042]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5XGT
  PDB 7YM1
  PDB 8GW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365