Detailed information NTG0082441

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: M2Y48_RS00715
• Genome accession: NZ_AP023344
• Coordinates: 151106..152161 (+)
• Length: 351 a.a.
• NCBI ID: WP_248420195.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain JSHR3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146106..157161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2Y48_RS00685 (JSHR3_01420)	-	146526..146939 (+)	414	WP_001023008.1	universal stress protein	-
M2Y48_RS00690 (JSHR3_01430)	-	146962..147237 (+)	276	WP_024112669.1	ATP-dependent Clp protease adaptor ClpS	-
M2Y48_RS00695 (JSHR3_01440)	-	147237..149459 (+)	2223	WP_248419939.1	ATP-dependent Clp protease ATP-binding subunit	-
M2Y48_RS00700 (JSHR3_01450)	panD	149449..149799 (+)	351	WP_154414081.1	aspartate 1-decarboxylase	-
M2Y48_RS00705 (JSHR3_01460)	-	149810..150103 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
M2Y48_RS00710 (JSHR3_01470)	-	150103..151098 (+)	996	WP_248420193.1	PDZ domain-containing protein	-
M2Y48_RS00715 (JSHR3_01480)	comB6	151106..152161 (+)	1056	WP_248420195.1	P-type conjugative transfer protein TrbL	Machinery gene
M2Y48_RS00720	comB7	152197..152301 (+)	105	WP_248419940.1	comB7 lipoprotein	Machinery gene
M2Y48_RS00725 (JSHR3_01490)	comB8	152298..153041 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
M2Y48_RS00730 (JSHR3_01500)	comB9	153041..154006 (+)	966	WP_231216038.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
M2Y48_RS00735 (JSHR3_01510)	comB10	153999..155135 (+)	1137	WP_001045734.1	DNA type IV secretion system protein ComB10	Machinery gene
M2Y48_RS00740 (JSHR3_01530)	-	155205..156618 (+)	1414	Protein_144	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39785.76 Da
• Isoelectric Point: 8.8165

>NTDB_id=82441 M2Y48_RS00715 WP_248420195.1 151106..152161(+) (comB6) [Helicobacter pylori strain JSHR3]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFVLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKEAYKLATNLSANLSQNALNSLQYITTPPASPPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=82441 M2Y48_RS00715 WP_248420195.1 151106..152161(+) (comB6) [Helicobacter pylori strain JSHR3]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTGTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAGCTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTCCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963