Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QJR38_RS00755 Genome accession   NZ_CP124248
Coordinates   167996..169519 (-) Length   507 a.a.
NCBI ID   WP_338658941.1    Uniprot ID   -
Organism   Yersinia intermedia strain Y162     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 162996..174519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR38_RS00735 (QJR38_00735) ytfT 164382..165380 (+) 999 WP_005190329.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  QJR38_RS00740 (QJR38_00740) yjfF 165380..166372 (+) 993 WP_032907423.1 galactofuranose ABC transporter, permease protein YjfF -
  QJR38_RS00745 (QJR38_00745) hdfR 166359..167240 (-) 882 WP_050087068.1 HTH-type transcriptional regulator HdfR -
  QJR38_RS00750 (QJR38_00750) - 167360..167698 (+) 339 WP_005190326.1 DUF413 domain-containing protein -
  QJR38_RS00755 (QJR38_00755) comM 167996..169519 (-) 1524 WP_338658941.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QJR38_RS00760 (QJR38_00760) ilvL 169887..169985 (+) 99 WP_071777720.1 ilv operon leader peptide -
  QJR38_RS00765 (QJR38_00765) ilvG 170126..171772 (+) 1647 WP_050086948.1 acetolactate synthase 2 catalytic subunit -
  QJR38_RS00770 (QJR38_00770) ilvM 171772..172044 (+) 273 WP_050087071.1 acetolactate synthase 2 small subunit -
  QJR38_RS00775 (QJR38_00775) - 172067..172993 (+) 927 WP_050086950.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54683.92 Da        Isoelectric Point: 7.6270

>NTDB_id=824206 QJR38_RS00755 WP_338658941.1 167996..169519(-) (comM) [Yersinia intermedia strain Y162]
MSLATIHTRATLGIQAPPVTVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFTFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLTHYEFLGELALSGALRRVSGAIPAALASSQVQRQLILPNANSHEIGLIPQGNSRVADHL
LAVCGFLQGENTLAQGQLLESTPSWDNSLDLQDIIGQPQAKRALEITAAGGHNLLLLGPPGTGKTMLANRLTGLLPPLTD
QEALEAAAINGLLHSNDLPAQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKVCFPAKVQLIAAMNPSPSGHYQGVHNRAPPQQILRYLAKLSGPFLDRFDLSIEVPLLPSGMLGAQKHQ
GESSETVRLRVLQARQRQLDRAGKINSQLNSQEVAEYCSLAPENAAFLEQALLTLGLSVRAWHHILKVARSIADLAQENN
IQRNHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=824206 QJR38_RS00755 WP_338658941.1 167996..169519(-) (comM) [Yersinia intermedia strain Y162]
ATGTCACTGGCAACCATTCATACCCGCGCCACATTAGGCATTCAGGCCCCACCGGTTACAGTAGAAGTTCATATCAGCAA
TGGGCTCCCCGGATTAATTTTGGTCGGATTACCGGAAACCACCGTAAAAGAGGCTCGAGATAGAGTTCGGAGCGCATTAA
TCAACAGTGGCTTCACTTTTCCAGCGAAGCGGATCACCGTTAGTCTGGCACCAGCAGACCTGCCTAAAGAAGGCGGCCGC
TATGACCTCCCTATTGCCTTAGCGATACTGGCTGCGTCAGAACAGATTCCTGCGGATAAATTAACCCACTATGAGTTCTT
GGGTGAGTTAGCCCTGTCAGGGGCGTTAAGGCGTGTTAGCGGCGCAATTCCGGCAGCACTCGCCAGCAGCCAAGTGCAGC
GGCAATTAATCCTGCCAAACGCCAACAGTCATGAGATAGGTCTAATACCACAAGGCAACAGCCGGGTTGCCGACCACTTA
TTAGCTGTATGTGGTTTTTTGCAGGGTGAAAACACCCTCGCTCAAGGTCAGCTCCTTGAATCTACACCATCATGGGATAA
CAGCCTCGACTTGCAAGATATCATCGGGCAGCCACAGGCTAAGCGCGCTTTAGAGATTACTGCGGCGGGTGGGCATAACC
TGCTATTACTCGGGCCACCAGGAACGGGCAAAACGATGCTGGCAAATCGGTTAACCGGATTACTGCCACCGTTGACGGAT
CAAGAGGCATTAGAGGCCGCTGCCATTAATGGCCTACTGCACAGTAACGATCTCCCCGCCCAATGGCGCTGCCGGGCTTT
TCGCGCCCCCCACCACAGCGCGTCGATGGCTGCACTGATTGGCGGAGGTTCCATTCCTCGCCCCGGTGAGATTTCGCTGG
CGCACAATGGTGTACTCTTCCTCGATGAATTACCTGAATTTGAACGTCGGGTGCTGGATTCTTTGCGCGAACCACTGGAA
TCAGGCGAAATTATCATTTCTCGTGCAGCGGCAAAAGTGTGCTTTCCTGCCAAAGTGCAACTTATCGCCGCAATGAACCC
CAGCCCCAGCGGTCATTATCAGGGGGTCCATAACCGTGCACCGCCACAACAGATTCTGCGCTATCTGGCAAAATTATCGG
GGCCGTTTCTGGACAGGTTTGATTTGTCGATAGAGGTGCCATTACTGCCATCAGGTATGCTGGGGGCCCAGAAGCATCAA
GGGGAAAGCAGTGAAACTGTCAGGTTACGAGTATTGCAGGCAAGGCAGAGGCAATTGGATCGAGCAGGGAAGATAAATTC
TCAGCTTAATAGCCAGGAAGTTGCAGAATATTGCTCCCTCGCCCCTGAGAATGCGGCCTTTCTGGAGCAAGCCCTGCTGA
CGCTGGGTTTGTCGGTACGCGCCTGGCACCATATTTTAAAAGTAGCGCGGAGCATTGCCGATCTCGCTCAGGAAAATAAC
ATCCAAAGAAATCACCTTTCGGAAGCACTGAGCTATCGTTGTATGGACCGGCTGCTGTTGCAGTTACACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.96

99.606

0.637
  comM Glaesserella parasuis strain SC1401

63.189

100

0.633
  comM Haemophilus influenzae Rd KW20

62.846

99.803

0.627
  comM Vibrio campbellii strain DS40M4

61.952

99.014

0.613
  comM Legionella pneumophila str. Paris

50.794

99.408

0.505
  comM Legionella pneumophila strain ERS1305867

50.794

99.408

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.442