Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAJCM20276_RS03840 Genome accession   NZ_AP023326
Coordinates   799293..799853 (+) Length   186 a.a.
NCBI ID   WP_018307871.1    Uniprot ID   -
Organism   Acetobacter aceti strain JCM20276     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 794293..804853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAJCM20276_RS03810 (AAJCM20276_07730) - 794661..794915 (-) 255 WP_099348344.1 sulfurtransferase TusA family protein -
  AAJCM20276_RS03815 (AAJCM20276_07740) - 795179..795604 (+) 426 WP_232091938.1 transcriptional repressor -
  AAJCM20276_RS03820 (AAJCM20276_07750) - 795601..796449 (+) 849 WP_018307872.1 GNAT family N-acetyltransferase -
  AAJCM20276_RS03825 (AAJCM20276_07760) lnt 796477..798060 (+) 1584 WP_099348346.1 apolipoprotein N-acyltransferase -
  AAJCM20276_RS03830 (AAJCM20276_07770) - 798142..798627 (+) 486 WP_099348347.1 helix-turn-helix domain-containing protein -
  AAJCM20276_RS03835 (AAJCM20276_07780) - 798607..799011 (-) 405 WP_232091833.1 hypothetical protein -
  AAJCM20276_RS03840 (AAJCM20276_07790) ssb 799293..799853 (+) 561 WP_018307871.1 single-stranded DNA-binding protein Machinery gene
  AAJCM20276_RS03845 (AAJCM20276_07800) - 800510..801838 (+) 1329 WP_099348348.1 cytochrome c -
  AAJCM20276_RS03850 (AAJCM20276_07810) - 801872..802360 (+) 489 WP_018307870.1 (2Fe-2S)-binding protein -
  AAJCM20276_RS03855 (AAJCM20276_07820) - 802353..804680 (+) 2328 WP_099348349.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19402.21 Da        Isoelectric Point: 5.3881

>NTDB_id=82405 AAJCM20276_RS03840 WP_018307871.1 799293..799853(+) (ssb) [Acetobacter aceti strain JCM20276]
MAGSVNKVILVGNLGRDPEIRTSQSGQKIASLSVATSDTWNDRASGERRERTEWHRVVVFNDRLADVAERFLRKGRKVYL
EGVLQTRKWTDQSGQEKYTTEVVLDRFRGELVLLDGRGSGEGEEGGGYGGGSEAGGFGGGGYGGGSGGGSRRIAGGGGAA
PRGSAPASPGGWDAPGGSDLDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=82405 AAJCM20276_RS03840 WP_018307871.1 799293..799853(+) (ssb) [Acetobacter aceti strain JCM20276]
ATGGCAGGCAGCGTGAACAAGGTCATTCTGGTTGGAAATCTCGGGCGTGACCCCGAAATCCGTACCAGCCAGAGCGGGCA
GAAGATCGCGTCGCTTTCGGTGGCCACGAGCGACACATGGAACGATCGTGCCTCCGGCGAGCGTCGTGAGCGTACGGAAT
GGCATCGTGTGGTCGTGTTCAATGACCGACTGGCGGACGTTGCGGAGCGGTTTCTGAGAAAGGGCCGGAAGGTCTATCTC
GAAGGCGTTCTGCAGACCCGTAAATGGACCGACCAGTCCGGACAGGAAAAATATACGACCGAGGTTGTGCTGGACCGTTT
CCGTGGTGAACTGGTGCTTCTGGATGGTCGCGGCTCCGGCGAGGGCGAAGAGGGCGGTGGCTACGGCGGCGGCTCCGAGG
CTGGCGGCTTCGGTGGTGGCGGTTATGGCGGCGGCTCAGGCGGTGGTTCCCGCCGGATTGCAGGTGGTGGCGGTGCGGCT
CCGCGTGGTAGTGCTCCGGCTTCTCCCGGCGGCTGGGATGCTCCGGGCGGCAGCGATCTGGACGACGAAATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.5
  ssb Vibrio cholerae strain A1552

43.169

98.387

0.425
  ssb Neisseria meningitidis MC58

40.526

100

0.414
  ssb Neisseria gonorrhoeae MS11

40.426

100

0.409

Multiple sequence alignment