Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QFW95_RS26365 Genome accession   NZ_CP124219
Coordinates   5903368..5904861 (+) Length   497 a.a.
NCBI ID   WP_047226141.1    Uniprot ID   A0A1N6Z6P4
Organism   Pseudomonas sp. P13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5898368..5909861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW95_RS26340 - 5898712..5899137 (-) 426 WP_047226195.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QFW95_RS26345 - 5899350..5900675 (-) 1326 WP_047226138.1 ammonium transporter -
  QFW95_RS26350 glnK 5900709..5901047 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  QFW95_RS26355 - 5901460..5901720 (+) 261 WP_047226139.1 accessory factor UbiK family protein -
  QFW95_RS26360 - 5901814..5903091 (-) 1278 WP_047226140.1 ATP-binding protein -
  QFW95_RS26365 comM 5903368..5904861 (+) 1494 WP_047226141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QFW95_RS26370 - 5904868..5906082 (-) 1215 WP_047226142.1 aldose 1-epimerase family protein -
  QFW95_RS26375 - 5906597..5908573 (-) 1977 WP_281459646.1 methyl-accepting chemotaxis protein -
  QFW95_RS26380 - 5908762..5909682 (-) 921 WP_047226144.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52974.06 Da        Isoelectric Point: 8.2066

>NTDB_id=823991 QFW95_RS26365 WP_047226141.1 5903368..5904861(+) (comM) [Pseudomonas sp. P13]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLMLDDVECLGELALSGAVRPVRGVLPAALAARKAGRTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVVPYVSNGLLSASKPYPDLNEVQGQVGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGETSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALSPKSES
GADTATVAEQVAEARERQQKRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQADR
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=823991 QFW95_RS26365 WP_047226141.1 5903368..5904861(+) (comM) [Pseudomonas sp. P13]
ATGTCGCTCGCCATTGTCCATAGCCGCGCCCAGGTGGGGGTGGAGGCTCCTGCCGTTACCGTTGAAGTCCATCTGGCCAA
TGGCTTGCCATCACTGACGATGGTCGGCTTGCCTGAAGCGGCGGTGAAGGAAAGCAAGGACAGGGTACGCAGCGCGATCA
TCAATTCGGGCCTGAATTTCCCGGCGCGGCGCATCACGCTGAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGGCGG
TTCGACCTGGCGATTGCCCTGGGGATCCTGGCGGCCAGCGTACAGGTGCCAACCCTGATGCTGGACGATGTGGAATGTCT
CGGGGAGTTGGCGTTGTCCGGCGCGGTGCGCCCGGTGCGCGGTGTGTTGCCCGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GTACGCTGCTGGTGCCGCGAGCGAATGCCGAGGAAGCCTGTCTGGCATCGGGGCTGAAGGTGATCGCGGTGGATCATCTG
CTCGAAGCGGTAGCCCACTTCAATGGCCATACCCCGGTGGTGCCTTATGTTTCCAACGGGCTACTCTCGGCGAGCAAGCC
CTATCCTGACCTGAATGAAGTACAAGGCCAGGTCGGGGCCAAGCGCGCATTGCTGATCGCCGCTGCGGGAGCCCATAACC
TGTTGTTCAGCGGACCACCAGGCACCGGCAAGACACTGCTCGCAAGCCGTTTACCGGGGTTGTTGCCGCCACTGGCTGAA
AGTGAAGCCCTGGAGGTCGCCGCGATTCAGTCGGTCGCCAGTTGCGTACCGTTGAGCCATTGGCCGCAGCGCCCGTTTCG
TCAACCGCATCACTCGGCGTCCGGCCCGGCGCTGGTGGGTGGCGGCTCAAAGCCGCAACCGGGAGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTTCTTGAGGTCTTGAGGGAGCCGCTGGAATCG
GGCCACATCGTGGTTTCGCGCGCTCGTGACCGGGTGCGCTTTCCGGCGCGTTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGATACCTTGGCGAGACCAGTGGCCGATGCTCGTGTACGCCGGACATGGTGCAGCGCTACCGCAATAAACTCT
CCGGCCCCTTACTGGACCGCATCGACCTGCACCTGACCGTCGCCCGGGAAGCCACGGCGTTGAGCCCCAAAAGCGAATCC
GGTGCGGATACGGCTACCGTAGCCGAGCAAGTGGCCGAGGCCCGCGAACGCCAGCAAAAGCGCCAGGGCTGTGCCAACGC
GTTCCTGGATCTGCCGGGTTTGCGTCGGCATTGCAAGTTATCCACAACCGATGAAACCTGGCTGGAAACCGCCTGCGAAC
GACTGACCCTGTCGCTGCGAGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACGCTGGCGGACCTCGAGCAAGCGGATCGA
ATCAGTCGGGAGCACTTGGCCGAAGCATTGCAGTACCGGCCCGCCACGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6Z6P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

99.598

0.555
  comM Haemophilus influenzae Rd KW20

54.509

100

0.547
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50.198

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469