Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QCL65_RS24625 Genome accession   NZ_CP124218
Coordinates   5337040..5338533 (+) Length   497 a.a.
NCBI ID   WP_407313592.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5332040..5343533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS24600 (QCL65_24415) - 5332893..5333207 (+) 315 WP_407313582.1 Rieske 2Fe-2S domain-containing protein -
  QCL65_RS24605 (QCL65_24420) - 5333217..5334398 (+) 1182 WP_407313584.1 MFS transporter -
  QCL65_RS24610 (QCL65_24425) - 5334411..5335628 (+) 1218 WP_407313586.1 ATP-grasp domain-containing protein -
  QCL65_RS24615 (QCL65_24430) - 5335633..5336316 (+) 684 WP_407313588.1 phenylalanine--tRNA ligase beta subunit-related protein -
  QCL65_RS24620 (QCL65_24435) - 5336340..5336756 (-) 417 WP_407313590.1 Lrp/AsnC family transcriptional regulator -
  QCL65_RS24625 (QCL65_24440) comM 5337040..5338533 (+) 1494 WP_407313592.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QCL65_RS24630 (QCL65_24445) - 5338530..5339723 (-) 1194 WP_407313594.1 aromatic amino acid transaminase -
  QCL65_RS24635 (QCL65_24450) - 5339789..5341075 (-) 1287 WP_407313597.1 NAD(P)/FAD-dependent oxidoreductase -
  QCL65_RS24640 (QCL65_24455) - 5341144..5342634 (-) 1491 WP_407313599.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52827.73 Da        Isoelectric Point: 7.7764

>NTDB_id=823961 QCL65_RS24625 WP_407313592.1 5337040..5338533(+) (comM) [Pseudomonas sp. nanlin1]
MALAIVHSRAQVGVGAPPVTVEAHLANGLPALTLVGLPEASVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGILAGSGQLPVAALHEVECLGELALSGAVRSVQGVLPAALAAREAGRALMVPRENAEEASLASGLTVIAVDHL
LELVAHFNGKKPLSPYNANGLLLLSKPYPDLSEVQGQHAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
AEALEVAAIQSVASHIPLRHWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GEIVIARAREKIRFPARFQLVAAMNPCPCGYLGEPSGKCRCSTEQIERYRNKLSGPLLDRIDLHLTVAREATELTPTAQA
GDDTATAAAKVAEARALQQQRQGCANAFLDLPNLRAHCRLSTADEKWLETACERLTLSLRAAHRLLKVARTLADLEQAQH
ISRSHVAEALQYRPSSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=823961 QCL65_RS24625 WP_407313592.1 5337040..5338533(+) (comM) [Pseudomonas sp. nanlin1]
ATGGCCCTTGCCATCGTTCACAGCCGCGCCCAAGTGGGCGTCGGTGCGCCACCGGTGACCGTCGAAGCTCACCTAGCCAA
TGGTTTGCCAGCGCTCACCTTGGTCGGGCTGCCGGAAGCCTCGGTCAAAGAAAGCAAAGACCGCGTGCGCAGCGCGATCC
TCAATTCCGGGCTGGACTTCCCCGCGCGGCGCATCACCCTCAACCTGGCACCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGGCCATTGCGCTGGGCATTCTGGCCGGCAGCGGGCAACTGCCGGTGGCGGCACTGCACGAGGTGGAGTGCCT
GGGCGAACTGGCGTTGTCCGGTGCGGTGCGCTCGGTTCAAGGGGTGTTACCCGCCGCCCTCGCCGCGCGGGAGGCCGGGC
GTGCACTGATGGTGCCGAGGGAGAATGCCGAAGAGGCCTCGCTGGCTTCCGGGCTGACGGTGATTGCCGTAGATCACTTG
CTGGAGCTGGTCGCGCATTTCAATGGCAAGAAGCCCCTAAGCCCGTACAACGCCAATGGCTTACTGTTGTTGAGCAAACC
GTACCCGGACCTCAGCGAGGTTCAAGGCCAACACGCAGCGAAACGCGCGCTATTGGTGGCGGCGGCAGGCGCGCACAACC
TGCTGTTCAGCGGGCCGCCCGGTACCGGTAAAACGCTGCTGGCGAGCCGTTTGCCGGGCCTGCTGCCGCCGCTGGATGAA
GCCGAAGCGCTGGAAGTCGCGGCTATTCAATCGGTAGCCAGCCATATACCGCTCAGGCATTGGCCGCAGCGGCCGTTCCG
GCACCCCCATCACTCAGCCTCTGGCGCCGCGTTGGTGGGGGGAGGTAGCCGCCCTCAGCCGGGGGAAATCACCCTGGCGC
ACCACGGGGTACTGTTCCTCGATGAACTGCCGGAATTCGATCGTAAGGTGCTGGAGGTATTACGTGAGCCTTTGGAGTCC
GGCGAAATCGTGATTGCCCGCGCCCGTGAAAAAATCCGCTTTCCCGCCCGTTTTCAGTTAGTCGCGGCCATGAACCCCTG
CCCCTGTGGGTATCTCGGCGAGCCGAGCGGCAAATGCCGATGCAGCACCGAGCAGATCGAGCGCTATCGCAATAAACTCT
CAGGGCCACTGCTCGACCGCATCGACTTGCACCTGACCGTAGCGCGGGAAGCCACCGAACTGACCCCGACCGCGCAAGCC
GGTGACGACACGGCCACCGCCGCCGCCAAAGTGGCCGAGGCGCGCGCCCTGCAGCAGCAACGCCAAGGCTGCGCCAATGC
CTTCCTTGATCTGCCAAACCTACGCGCCCACTGCAGGTTATCCACAGCCGATGAGAAATGGCTGGAGACGGCGTGCGAGC
GATTAACGCTGTCATTGCGGGCAGCGCATCGATTGTTGAAAGTCGCGCGCACGTTGGCCGACCTTGAGCAAGCGCAACAC
ATAAGCCGCAGCCACGTGGCAGAGGCGTTGCAGTACCGGCCAAGCAGCGGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Haemophilus influenzae Rd KW20

54.059

100

0.549
  comM Glaesserella parasuis strain SC1401

53.877

100

0.545
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Legionella pneumophila str. Paris

48.589

99.799

0.485
  comM Legionella pneumophila strain ERS1305867

48.589

99.799

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459