Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QE150_RS02420 Genome accession   NZ_CP123993
Coordinates   341657..342475 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336657..347475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02385 (QE150_02385) - 337239..337346 (-) 108 Protein_295 hypothetical protein -
  QE150_RS02390 (QE150_02390) rpoZ 337408..337686 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QE150_RS02395 (QE150_02395) gmk 337759..338388 (-) 630 WP_000015937.1 guanylate kinase -
  QE150_RS02400 (QE150_02400) ispH 338511..339461 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QE150_RS02405 (QE150_02405) fimU 339631..340104 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  QE150_RS02410 (QE150_02410) pilV 340098..340658 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QE150_RS02415 (QE150_02415) pilW 340659..341660 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  QE150_RS02420 (QE150_02420) pilX 341657..342475 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QE150_RS02425 (QE150_02425) - 342487..346340 (+) 3854 Protein_303 PilC/PilY family type IV pilus protein -
  QE150_RS02430 (QE150_02430) pilY2 346353..346835 (+) 483 WP_032058632.1 type IV pilin protein Machinery gene
  QE150_RS02435 (QE150_02435) pilE 346832..347257 (+) 426 WP_270901088.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=823648 QE150_RS02420 WP_000149374.1 341657..342475(+) (pilX) [Acinetobacter baumannii strain Ab4294]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=823648 QE150_RS02420 WP_000149374.1 341657..342475(+) (pilX) [Acinetobacter baumannii strain Ab4294]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993