Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   QE150_RS02435 Genome accession   NZ_CP123993
Coordinates   346832..347257 (+) Length   141 a.a.
NCBI ID   WP_270901088.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341832..352257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02425 (QE150_02425) - 342487..346340 (+) 3854 Protein_303 PilC/PilY family type IV pilus protein -
  QE150_RS02430 (QE150_02430) pilY2 346353..346835 (+) 483 WP_032058632.1 type IV pilin protein Machinery gene
  QE150_RS02435 (QE150_02435) pilE 346832..347257 (+) 426 WP_270901088.1 type IV pilin protein Machinery gene
  QE150_RS02440 (QE150_02440) rpsP 347404..347655 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QE150_RS02445 (QE150_02445) rimM 347675..348223 (+) 549 WP_031961380.1 ribosome maturation factor RimM -
  QE150_RS02450 (QE150_02450) trmD 348269..349009 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QE150_RS02455 (QE150_02455) rplS 349217..349585 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  QE150_RS02460 (QE150_02460) - 349638..350579 (-) 942 WP_085916958.1 triacylglycerol lipase -
  QE150_RS02465 (QE150_02465) - 350694..351728 (-) 1035 WP_270901087.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15240.42 Da        Isoelectric Point: 7.8144

>NTDB_id=823650 QE150_RS02435 WP_270901088.1 346832..347257(+) (pilE) [Acinetobacter baumannii strain Ab4294]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNTTIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=823650 QE150_RS02435 WP_270901088.1 346832..347257(+) (pilE) [Acinetobacter baumannii strain Ab4294]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTTGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCTTCAAATACAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504