Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QE150_RS02410 Genome accession   NZ_CP123993
Coordinates   340098..340658 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335098..345658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02385 (QE150_02385) - 337239..337346 (-) 108 Protein_295 hypothetical protein -
  QE150_RS02390 (QE150_02390) rpoZ 337408..337686 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QE150_RS02395 (QE150_02395) gmk 337759..338388 (-) 630 WP_000015937.1 guanylate kinase -
  QE150_RS02400 (QE150_02400) ispH 338511..339461 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QE150_RS02405 (QE150_02405) fimU 339631..340104 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  QE150_RS02410 (QE150_02410) pilV 340098..340658 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QE150_RS02415 (QE150_02415) pilW 340659..341660 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  QE150_RS02420 (QE150_02420) pilX 341657..342475 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=823646 QE150_RS02410 WP_002194578.1 340098..340658(+) (pilV) [Acinetobacter baumannii strain Ab4294]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=823646 QE150_RS02410 WP_002194578.1 340098..340658(+) (pilV) [Acinetobacter baumannii strain Ab4294]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414