Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   QE150_RS02405 Genome accession   NZ_CP123993
Coordinates   339631..340104 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334631..345104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02380 (QE150_02380) - 335095..337200 (-) 2106 WP_001117590.1 HD domain-containing protein -
  QE150_RS02385 (QE150_02385) - 337239..337346 (-) 108 Protein_295 hypothetical protein -
  QE150_RS02390 (QE150_02390) rpoZ 337408..337686 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QE150_RS02395 (QE150_02395) gmk 337759..338388 (-) 630 WP_000015937.1 guanylate kinase -
  QE150_RS02400 (QE150_02400) ispH 338511..339461 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QE150_RS02405 (QE150_02405) fimU 339631..340104 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  QE150_RS02410 (QE150_02410) pilV 340098..340658 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QE150_RS02415 (QE150_02415) pilW 340659..341660 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  QE150_RS02420 (QE150_02420) pilX 341657..342475 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=823645 QE150_RS02405 WP_001214065.1 339631..340104(+) (fimU) [Acinetobacter baumannii strain Ab4294]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=823645 QE150_RS02405 WP_001214065.1 339631..340104(+) (fimU) [Acinetobacter baumannii strain Ab4294]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACCACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1