Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   QE150_RS02415 Genome accession   NZ_CP123993
Coordinates   340659..341660 (+) Length   333 a.a.
NCBI ID   WP_002132301.1    Uniprot ID   A0AAX0TUC3
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335659..346660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02385 (QE150_02385) - 337239..337346 (-) 108 Protein_295 hypothetical protein -
  QE150_RS02390 (QE150_02390) rpoZ 337408..337686 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QE150_RS02395 (QE150_02395) gmk 337759..338388 (-) 630 WP_000015937.1 guanylate kinase -
  QE150_RS02400 (QE150_02400) ispH 338511..339461 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QE150_RS02405 (QE150_02405) fimU 339631..340104 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  QE150_RS02410 (QE150_02410) pilV 340098..340658 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QE150_RS02415 (QE150_02415) pilW 340659..341660 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  QE150_RS02420 (QE150_02420) pilX 341657..342475 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QE150_RS02425 (QE150_02425) - 342487..346340 (+) 3854 Protein_303 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35846.52 Da        Isoelectric Point: 6.1010

>NTDB_id=823647 QE150_RS02415 WP_002132301.1 340659..341660(+) (pilW) [Acinetobacter baumannii strain Ab4294]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=823647 QE150_RS02415 WP_002132301.1 340659..341660(+) (pilW) [Acinetobacter baumannii strain Ab4294]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994