Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QHG62_RS01915 Genome accession   NZ_CP123990
Coordinates   414210..415748 (-) Length   512 a.a.
NCBI ID   WP_281149141.1    Uniprot ID   -
Organism   Variovorax paradoxus strain MGMM5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 409210..420748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG62_RS01900 (QHG62_01900) tagF 410145..410861 (+) 717 WP_281149137.1 type VI secretion system-associated protein TagF -
  QHG62_RS01905 (QHG62_01905) - 410893..412974 (+) 2082 WP_281149139.1 serine/threonine-protein kinase -
  QHG62_RS01910 (QHG62_01910) - 412967..414199 (-) 1233 WP_281149140.1 MFS transporter -
  QHG62_RS01915 (QHG62_01915) comM 414210..415748 (-) 1539 WP_281149141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QHG62_RS01920 (QHG62_01920) - 415966..416790 (+) 825 WP_281149142.1 TorF family putative porin -
  QHG62_RS01925 (QHG62_01925) glnK 416864..417202 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  QHG62_RS01930 (QHG62_01930) amt 417224..418826 (+) 1603 Protein_384 ammonium transporter -
  QHG62_RS01935 (QHG62_01935) - 419092..420024 (+) 933 WP_281149148.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53516.03 Da        Isoelectric Point: 8.8297

>NTDB_id=823613 QHG62_RS01915 WP_281149141.1 414210..415748(-) (comM) [Variovorax paradoxus strain MGMM5]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIQAASLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPTESAKEAALVPGGEVYGA
RHLLDVVQRFMPEGGAAQPAEPPSADGWARIQAAEAGATPRYADLADVKGHASAKRALEIAAAGGHSLLMVGEPGSGKSM
LAQRFAGLLPPMSIDEALETAAVASLGGSFSTERWMSRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLFLDEFPEF
ARSALEALREPLETGTITIARAARRAEFPARFQLIAAMNPCPCGYQGSALKACRCTPDQVSRYQSKLSGPLLDRIDLHIE
VPAVSAHQLLGAPAGEATGSIRARVVAARNFAVQRQGSPNQALQAGAIDRHAALDDAARKFMVNAAAKLGWSARSTHRAL
KVARTVADLAGAESVQAVHVAEAVQYRRGLRN

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=823613 QHG62_RS01915 WP_281149141.1 414210..415748(-) (comM) [Variovorax paradoxus strain MGMM5]
ATGAGCTTGTCTTTGGTGCAAAGCCGCGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCAGCTTTACGCTGGTCGGGCTGGCAGAAACCGAGGTCAAGGAGGCGCGCGAACGCGTGCGTTCGGCCATAC
AGAATGCCGGCCTCGAGTTTCCAAATAACAAGCGGATCACCGTCAACCTGGCGCCAGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCCATTGCGCTTGGCATCCTCGCGGCCAGCGGGCAGATCCAGGCTGCAAGCCTGGCCGGGCACGAATT
TGCGGGCGAACTTTCCCTTTCAGGCGAGCTGCGGCCCGTGCGCGGCGCGCTGGCCATGGCGCTTGCGCTGCACACCCGCG
GCATCGCGACACGGCTGGTGCTGCCTACCGAAAGCGCAAAAGAAGCGGCCCTGGTGCCCGGCGGCGAGGTGTACGGGGCC
AGGCACCTGCTCGATGTGGTGCAGCGCTTCATGCCTGAAGGCGGCGCGGCGCAGCCGGCCGAGCCGCCCAGCGCGGACGG
CTGGGCACGCATCCAGGCCGCCGAGGCGGGCGCTACCCCCCGATATGCCGACCTGGCCGACGTGAAGGGACATGCAAGCG
CCAAGCGCGCATTGGAAATTGCCGCCGCCGGCGGGCATAGCCTCCTGATGGTCGGCGAGCCCGGCTCGGGCAAGTCGATG
CTGGCGCAGCGCTTTGCCGGGCTGCTGCCGCCGATGAGCATCGACGAGGCGCTGGAGACCGCGGCCGTGGCCAGCCTGGG
CGGCAGCTTCTCGACCGAGCGCTGGATGAGCCGGCCGACTTCTGCGCCGCACCACACCTCCAGTGCGGTGGCGCTTGTGG
GCGGCGGCTCCCCTCCACGCCCCGGCGAAATCTCACAGGCGCACCACGGGGTTCTCTTTCTCGATGAATTCCCGGAGTTC
GCAAGGTCCGCCCTCGAGGCGCTGCGCGAGCCGCTCGAAACCGGCACCATCACCATTGCGCGGGCCGCCCGGCGCGCCGA
GTTTCCCGCGCGCTTCCAGCTCATCGCTGCCATGAACCCCTGTCCTTGCGGCTACCAGGGCTCGGCACTGAAGGCCTGCC
GCTGCACGCCCGACCAGGTTTCGCGCTACCAAAGCAAGCTCAGCGGCCCGCTGCTCGACCGCATCGACCTGCACATCGAA
GTGCCCGCGGTATCGGCGCACCAACTGCTCGGTGCGCCGGCCGGCGAGGCGACCGGCAGCATCCGCGCCCGCGTGGTTGC
CGCGCGCAACTTTGCGGTGCAGCGCCAGGGTAGCCCGAACCAGGCACTGCAAGCCGGCGCCATCGACCGGCACGCCGCAC
TGGACGACGCCGCGCGCAAGTTCATGGTCAACGCCGCAGCCAAGCTCGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTC
AAGGTGGCGCGCACGGTGGCTGATCTGGCCGGCGCCGAATCGGTGCAGGCCGTGCATGTGGCGGAGGCTGTGCAGTACCG
TCGGGGGTTGCGAAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.588

99.609

0.504
  comM Glaesserella parasuis strain SC1401

50.489

99.805

0.504
  comM Vibrio campbellii strain DS40M4

50.098

99.414

0.498
  comM Haemophilus influenzae Rd KW20

49.222

100

0.494
  comM Legionella pneumophila strain ERS1305867

48.833

100

0.49
  comM Legionella pneumophila str. Paris

48.833

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.053

99.805

0.43