Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   QHG52_RS09430 Genome accession   NZ_CP123912
Coordinates   2054069..2054722 (+) Length   217 a.a.
NCBI ID   WP_005029252.1    Uniprot ID   N9F8A0
Organism   Acinetobacter bereziniae strain UCO-553     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049069..2059722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS09395 kdsB 2049477..2050238 (+) 762 WP_005029263.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QHG52_RS09400 - 2050276..2051256 (+) 981 WP_005029261.1 DNA polymerase III, delta' subunit -
  QHG52_RS09405 - 2051283..2051624 (+) 342 WP_004830992.1 PilZ domain-containing protein -
  QHG52_RS09410 - 2051652..2052425 (+) 774 WP_005029259.1 TatD family hydrolase -
  QHG52_RS09415 - 2052510..2053124 (+) 615 WP_005029256.1 TetR/AcrR family transcriptional regulator -
  QHG52_RS09420 - 2053130..2053696 (+) 567 WP_005029254.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QHG52_RS09425 xcpV 2053683..2054066 (+) 384 WP_004830987.1 type II secretion system minor pseudopilin GspI Machinery gene
  QHG52_RS09430 xcpW 2054069..2054722 (+) 654 WP_005029252.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QHG52_RS09435 gspK 2054715..2055686 (+) 972 WP_004830985.1 type II secretion system minor pseudopilin GspK -
  QHG52_RS09440 - 2055912..2056508 (+) 597 WP_005029250.1 6-carboxytetrahydropterin synthase -
  QHG52_RS09445 ung 2056583..2057296 (+) 714 WP_004830983.1 uracil-DNA glycosylase -
  QHG52_RS09450 - 2057293..2058414 (+) 1122 WP_004830982.1 enoyl-CoA hydratase/isomerase family protein -
  QHG52_RS09455 tadA 2058421..2058945 (+) 525 WP_005029246.1 tRNA adenosine(34) deaminase TadA -
  QHG52_RS09460 - 2059032..2059466 (+) 435 WP_004830980.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25078.60 Da        Isoelectric Point: 8.2714

>NTDB_id=823075 QHG52_RS09430 WP_005029252.1 2054069..2054722(+) (xcpW) [Acinetobacter bereziniae strain UCO-553]
MNVVQNKNNNTVKMQKRSGFTLIELLVAIAIFAVLSALGWKIFDYLIKVKDRNVMHEENLGQLQGAYQQIQRDTLQIVPI
SARSGEQVEPALRLDRQKLSFSKAGVTDPLKQGLSPYERIEYGYDQQEKKLYRLKYSNLNRNSSEQPLSSVMLTDVDAYQ
IEILNPNESDRWPNDLTKNDSQLPRGIKMKITIHEVEYEWIFSLLNTDFLIKNNQNG

Nucleotide


Download         Length: 654 bp        

>NTDB_id=823075 QHG52_RS09430 WP_005029252.1 2054069..2054722(+) (xcpW) [Acinetobacter bereziniae strain UCO-553]
ATGAACGTCGTCCAAAATAAAAACAATAATACTGTCAAAATGCAGAAAAGATCAGGTTTTACTTTGATTGAGCTACTTGT
CGCAATTGCTATTTTTGCTGTGCTTTCTGCCTTGGGTTGGAAAATATTTGATTATTTGATTAAGGTCAAAGATCGTAATG
TGATGCACGAAGAGAATTTAGGGCAACTCCAAGGTGCATATCAACAAATTCAGCGTGATACATTGCAAATCGTGCCAATT
TCAGCCCGAAGTGGTGAACAAGTTGAACCTGCATTGCGCTTAGATCGACAAAAACTATCATTTAGTAAAGCTGGTGTTAC
AGATCCTTTAAAGCAAGGTCTCTCACCTTATGAGCGAATAGAATACGGTTATGACCAGCAAGAGAAGAAACTATATCGAT
TAAAGTATTCCAATCTGAATCGAAATAGCTCGGAACAACCATTGTCGAGTGTCATGCTGACGGATGTAGATGCCTATCAA
ATTGAAATACTCAATCCAAATGAGTCAGATCGTTGGCCAAATGACTTAACTAAAAATGATAGCCAATTACCGCGTGGAAT
TAAAATGAAAATCACGATTCATGAAGTAGAATATGAGTGGATTTTTAGTTTATTGAATACTGATTTTTTGATAAAGAATA
ATCAAAATGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(70-201)

Prokaryotic N-terminal methylation motif (N_methyl)

(14-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9F8A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.813

98.618

0.59