Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QHG52_RS08635 Genome accession   NZ_CP123912
Coordinates   1885221..1885931 (-) Length   236 a.a.
NCBI ID   WP_004831157.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain UCO-553     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1880221..1890931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS08615 - 1881601..1882392 (+) 792 WP_004831162.1 M48 family metallopeptidase -
  QHG52_RS08620 - 1882534..1882839 (+) 306 WP_005029483.1 phosphoethanolamine transferase domain-containing protein -
  QHG52_RS08625 - 1882952..1883737 (+) 786 WP_004831159.1 M48 family metallopeptidase -
  QHG52_RS08630 - 1883851..1884900 (-) 1050 WP_004831158.1 NADP(H)-dependent aldo-keto reductase -
  QHG52_RS08635 crp 1885221..1885931 (-) 711 WP_004831157.1 cAMP-activated global transcriptional regulator CRP Regulator
  QHG52_RS08640 - 1886083..1886505 (+) 423 WP_004831156.1 OsmC family protein -
  QHG52_RS08645 - 1886685..1887449 (-) 765 WP_005029480.1 peptidoglycan DD-metalloendopeptidase family protein -
  QHG52_RS08650 - 1888085..1890034 (-) 1950 WP_005029479.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26639.24 Da        Isoelectric Point: 4.7528

>NTDB_id=823072 QHG52_RS08635 WP_004831157.1 1885221..1885931(-) (crp) [Acinetobacter bereziniae strain UCO-553]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKFSEDEYNNDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=823072 QHG52_RS08635 WP_004831157.1 1885221..1885931(-) (crp) [Acinetobacter bereziniae strain UCO-553]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCACCTGGTCAATTACCTGAGTCAGTCAAAGCTTTGCTCAA
GAGAGCCCACATCAATCGTTTTCCTAAACGCTCAACAATCATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGCGAAGATGATGAGCGTGAAATCGTTGTTGCCTATTTGAACCCTGGGGATTTT
TTCGGAGAAATGGGTTTATTTGAGCAAAACCCACAACGTACAGCCGAAGTCAGAACTCGTGACGTATGTGAAATCGCAGA
GATTTCATATGACAATTTCCACGAAATCAGTAAACAATACCCTGACTTAAGTTATGCAGTATTTGCACAACTTGTTCGTC
GCTTAAAGAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTCTCTGGTCGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAACCTGAAGCGATGATTTTACCAAATGGTCGTCAGATTCGTATTACTCGTCAAGAAATTGGTCGCATCGT
AGGTTGCTCACGTGAAATGGTAGGGCGTGTATTAAAAACGCTTGAAGAGCAAGGTATGATCGAGACTGATGGTAAAGCAA
TTTTAATTTTTGATGCGTCTTTAGAAGAGTCTAAATTCTCTGAAGATGAATATAACAATGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

89.787

99.576

0.894
  crp Vibrio cholerae strain A1552

48.058

87.288

0.419
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403