Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QC632_RS23600 Genome accession   NZ_CP123897
Coordinates   5337416..5338945 (+) Length   509 a.a.
NCBI ID   WP_281021743.1    Uniprot ID   -
Organism   Methylomonas sp. UP202     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5332416..5343945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC632_RS23570 (QC632_23570) - 5332784..5333686 (-) 903 WP_281021740.1 serine/threonine-protein kinase -
  QC632_RS23575 (QC632_23575) - 5333741..5334592 (+) 852 WP_231883758.1 YicC/YloC family endoribonuclease -
  QC632_RS23580 (QC632_23580) - 5334613..5335041 (+) 429 WP_281021741.1 winged helix-turn-helix domain-containing protein -
  QC632_RS23585 (QC632_23585) - 5335197..5336426 (-) 1230 WP_281021742.1 NADP-dependent isocitrate dehydrogenase -
  QC632_RS23590 (QC632_23590) - 5336573..5337154 (+) 582 WP_064031394.1 MarR family winged helix-turn-helix transcriptional regulator -
  QC632_RS23595 (QC632_23595) - 5337160..5337411 (+) 252 WP_071159226.1 accessory factor UbiK family protein -
  QC632_RS23600 (QC632_23600) comM 5337416..5338945 (+) 1530 WP_281021743.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QC632_RS23605 (QC632_23605) - 5338999..5339601 (-) 603 WP_064031397.1 peroxiredoxin C -
  QC632_RS23610 (QC632_23610) - 5339854..5340366 (+) 513 WP_064031398.1 hypothetical protein -
  QC632_RS23615 (QC632_23615) nadC 5340379..5341212 (-) 834 WP_281021744.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QC632_RS23620 (QC632_23620) ampD 5341281..5341862 (+) 582 WP_281021745.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QC632_RS23625 (QC632_23625) - 5341915..5343849 (-) 1935 WP_071159232.1 dynamin family protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54324.32 Da        Isoelectric Point: 7.8688

>NTDB_id=823010 QC632_RS23600 WP_281021743.1 5337416..5338945(+) (comM) [Methylomonas sp. UP202]
MSLAVVYSRGRTGIDAPLVTVEVDVANGLPALNIVGLPETAVKESKDRVRGAIVNSQFEFPIARITVNLAPADLPKEGGR
FDLAIALGILAASGQIPKTALHEYECIGELALGGELRPIPGALPVAIHCRNAARQLILPVSCAAEASLIQDAALLPARTL
LEICAHLTGRQAIDSASYAFGLPTAAFDIDFADVHGQFHVKRALEIAAAGAHNLLMLGPPGTGKSMLAARLPTILPELSE
QQAQETAAIASVSDQGLDVGRWRQPPFRAPHHTASAAALVGGGSNPKPGEISLAHHGALFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPARFQLIAAMNPCPCGYLGDSSGRCRCTSEQIARYRARVSGPLLDRIDMHLEVPRVPISVLREGA
SAGEERSQIIRERVAAARNIAYSRCGKANSALSAAEVKRYCSLTDAGHRLLEQAMEKFGLSHRAYHRILKLARTIADLAG
SNTIEIPHLSEAIGYRKLDRTRGGPNSGA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=823010 QC632_RS23600 WP_281021743.1 5337416..5338945(+) (comM) [Methylomonas sp. UP202]
ATGTCGCTGGCAGTGGTGTACAGCCGGGGGCGCACCGGCATAGACGCCCCGCTGGTCACCGTCGAAGTCGATGTCGCCAA
CGGCTTGCCGGCCCTAAACATCGTCGGCTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGATAGGGTGAGGGGCGCGATCG
TCAATTCGCAATTCGAGTTTCCGATCGCGCGGATCACCGTCAATCTGGCGCCGGCCGATTTGCCCAAGGAAGGCGGCCGT
TTCGATCTGGCTATCGCGCTCGGCATTCTGGCCGCCTCCGGCCAAATCCCGAAAACCGCGCTTCACGAATACGAATGTAT
CGGCGAATTGGCACTGGGCGGCGAATTGCGGCCGATACCCGGCGCGCTACCGGTCGCGATTCACTGCCGCAACGCCGCCA
GGCAACTGATTTTGCCGGTGTCCTGCGCCGCCGAAGCCAGTCTGATCCAAGACGCGGCATTGCTGCCTGCCCGCACTTTA
CTGGAAATCTGCGCCCATCTGACAGGCCGGCAAGCCATCGACTCCGCGTCATACGCATTTGGGCTACCCACGGCCGCATT
CGACATCGATTTTGCCGACGTTCACGGACAATTCCACGTCAAACGCGCGCTGGAAATAGCCGCCGCCGGCGCCCATAACT
TATTGATGCTAGGCCCGCCCGGCACAGGGAAGTCGATGTTAGCGGCACGCTTGCCGACGATTTTGCCGGAACTCAGCGAA
CAGCAAGCGCAGGAAACGGCGGCGATCGCCTCGGTCAGCGACCAGGGACTAGACGTCGGCCGCTGGCGGCAACCGCCGTT
TCGAGCGCCACACCATACCGCATCCGCCGCGGCGCTAGTCGGCGGCGGCAGCAACCCCAAGCCTGGCGAAATTTCCCTGG
CTCATCACGGCGCCTTGTTCCTGGACGAATTACCGGAGTTTGATCGCAAGGTACTGGAAGTCTTACGTGAACCGTTGGAA
ACCGGCCATATCACGATTTCCCGCGCGAATCGCCAAGCCGATTTTCCGGCACGGTTTCAGTTGATCGCGGCCATGAACCC
TTGTCCTTGCGGCTACTTGGGCGATTCGTCGGGGCGTTGCCGTTGCACCTCTGAGCAAATCGCGCGCTACCGGGCCAGAG
TATCGGGCCCGCTACTGGACCGAATCGACATGCACTTGGAAGTCCCCAGGGTGCCGATTTCGGTGCTACGCGAGGGTGCA
TCGGCCGGCGAGGAACGCAGCCAGATCATTCGCGAGCGCGTGGCGGCGGCTCGAAACATCGCCTATAGCCGTTGCGGCAA
GGCCAATTCGGCATTATCAGCGGCGGAAGTCAAACGCTACTGCTCTCTCACGGACGCAGGCCACCGGCTGCTCGAACAAG
CCATGGAAAAGTTCGGACTGTCGCACCGGGCGTATCATCGCATTCTGAAATTGGCCCGCACCATCGCCGACCTGGCCGGT
TCCAATACGATCGAAATTCCGCATCTAAGCGAAGCCATCGGCTATCGAAAGCTGGATAGAACTCGAGGCGGGCCAAACTC
CGGCGCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55

98.232

0.54
  comM Vibrio campbellii strain DS40M4

54.6

98.232

0.536
  comM Haemophilus influenzae Rd KW20

52.976

99.018

0.525
  comM Glaesserella parasuis strain SC1401

52.475

99.214

0.521
  comM Legionella pneumophila str. Paris

51.71

97.642

0.505
  comM Legionella pneumophila strain ERS1305867

51.71

97.642

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.882

99.804

0.448