Detailed information NTG0822720

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R6U80_RS12320
• Genome accession: NZ_CP137623
• Coordinates: 2479747..2480748 (-)
• Length: 333 a.a.
• NCBI ID: WP_313791883.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain NCK401
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2474747..2485748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6U80_RS12295 (R6U80_12295)	-	2475033..2475398 (-)	366	WP_003131985.1	MerR family transcriptional regulator	-
R6U80_RS12300 (R6U80_12300)	-	2475499..2475936 (-)	438	WP_098397370.1	low molecular weight protein-tyrosine-phosphatase	-
R6U80_RS12305 (R6U80_12305)	-	2476348..2476965 (-)	618	WP_098397371.1	AAA family ATPase	-
R6U80_RS12310 (R6U80_12310)	-	2476965..2478149 (-)	1185	WP_098397372.1	ABC transporter permease	-
R6U80_RS12315 (R6U80_12315)	-	2478726..2479610 (-)	885	WP_012898698.1	XRE/MutR family transcriptional regulator	-
R6U80_RS12320 (R6U80_12320)	ruvB	2479747..2480748 (-)	1002	WP_313791883.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R6U80_RS12325 (R6U80_12325)	ruvA	2480875..2481468 (-)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
R6U80_RS12330 (R6U80_12330)	hexB	2481581..2483551 (-)	1971	WP_058223262.1	DNA mismatch repair endonuclease MutL	Machinery gene
R6U80_RS12335 (R6U80_12335)	-	2483681..2484376 (-)	696	WP_010906384.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37647.20 Da
• Isoelectric Point: 4.5825

>NTDB_id=822720 R6U80_RS12320 WP_313791883.1 2479747..2480748(-) (ruvB) [Lactococcus lactis strain NCK401]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEIIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=822720 R6U80_RS12320 WP_313791883.1 2479747..2480748(-) (ruvB) [Lactococcus lactis strain NCK401]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGGGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTGGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAATTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAACATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGTTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.916	99.7	0.787
ruvB	Streptococcus pneumoniae D39	78.916	99.7	0.787
ruvB	Streptococcus pneumoniae TIGR4	78.614	99.7	0.784
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.801	96.697	0.598
ruvB	Helicobacter pylori 26695	51.553	96.697	0.499
ruvB	Synechocystis sp. PCC 6803	51.935	93.093	0.483