Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QFB56_RS01690 Genome accession   NZ_CP123765
Coordinates   350052..350831 (+) Length   259 a.a.
NCBI ID   WP_032057248.1    Uniprot ID   A0A009QPU8
Organism   Acinetobacter pittii strain AP8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345052..355831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS01675 (QFB56_01675) ponA 345633..348194 (-) 2562 WP_032057246.1 penicillin-binding protein PBP1a -
  QFB56_RS01680 (QFB56_01680) pilM 348356..349414 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  QFB56_RS01685 (QFB56_01685) pilN 349414..350055 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  QFB56_RS01690 (QFB56_01690) pilO 350052..350831 (+) 780 WP_032057248.1 type 4a pilus biogenesis protein PilO Machinery gene
  QFB56_RS01695 (QFB56_01695) pilP 350843..351370 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  QFB56_RS01700 (QFB56_01700) pilQ 351433..353598 (+) 2166 WP_032063183.1 type IV pilus secretin PilQ Machinery gene
  QFB56_RS01705 (QFB56_01705) aroK 353610..354179 (+) 570 WP_002116987.1 shikimate kinase AroK -
  QFB56_RS01710 (QFB56_01710) aroB 354208..355290 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29449.53 Da        Isoelectric Point: 5.7456

>NTDB_id=822597 QFB56_RS01690 WP_032057248.1 350052..350831(+) (pilO) [Acinetobacter pittii strain AP8900]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGRSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNAHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=822597 QFB56_RS01690 WP_032057248.1 350052..350831(+) (pilO) [Acinetobacter pittii strain AP8900]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAATTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAGATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCGGTTGAAAATCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AATGCCTCCGATAGCCGTAATGCACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QPU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

71.552

89.575

0.641