Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QFB56_RS01685 Genome accession   NZ_CP123765
Coordinates   349414..350055 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain AP8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344414..355055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS01665 (QFB56_01665) - 344458..344790 (+) 333 WP_002116981.1 hypothetical protein -
  QFB56_RS01670 (QFB56_01670) rrmA 344793..345617 (+) 825 WP_080777164.1 putative RNA methyltransferase -
  QFB56_RS01675 (QFB56_01675) ponA 345633..348194 (-) 2562 WP_032057246.1 penicillin-binding protein PBP1a -
  QFB56_RS01680 (QFB56_01680) pilM 348356..349414 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  QFB56_RS01685 (QFB56_01685) pilN 349414..350055 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  QFB56_RS01690 (QFB56_01690) pilO 350052..350831 (+) 780 WP_032057248.1 type 4a pilus biogenesis protein PilO Machinery gene
  QFB56_RS01695 (QFB56_01695) pilP 350843..351370 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  QFB56_RS01700 (QFB56_01700) pilQ 351433..353598 (+) 2166 WP_032063183.1 type IV pilus secretin PilQ Machinery gene
  QFB56_RS01705 (QFB56_01705) aroK 353610..354179 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=822596 QFB56_RS01685 WP_002116944.1 349414..350055(+) (pilN) [Acinetobacter pittii strain AP8900]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=822596 QFB56_RS01685 WP_002116944.1 349414..350055(+) (pilN) [Acinetobacter pittii strain AP8900]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685