Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QFB56_RS01695 Genome accession   NZ_CP123765
Coordinates   350843..351370 (+) Length   175 a.a.
NCBI ID   WP_005067086.1    Uniprot ID   A0A009R948
Organism   Acinetobacter pittii strain AP8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345843..356370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS01680 (QFB56_01680) pilM 348356..349414 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  QFB56_RS01685 (QFB56_01685) pilN 349414..350055 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  QFB56_RS01690 (QFB56_01690) pilO 350052..350831 (+) 780 WP_032057248.1 type 4a pilus biogenesis protein PilO Machinery gene
  QFB56_RS01695 (QFB56_01695) pilP 350843..351370 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  QFB56_RS01700 (QFB56_01700) pilQ 351433..353598 (+) 2166 WP_032063183.1 type IV pilus secretin PilQ Machinery gene
  QFB56_RS01705 (QFB56_01705) aroK 353610..354179 (+) 570 WP_002116987.1 shikimate kinase AroK -
  QFB56_RS01710 (QFB56_01710) aroB 354208..355290 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -
  QFB56_RS01715 (QFB56_01715) - 355307..356176 (+) 870 WP_032057253.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19262.43 Da        Isoelectric Point: 9.7301

>NTDB_id=822598 QFB56_RS01695 WP_005067086.1 350843..351370(+) (pilP) [Acinetobacter pittii strain AP8900]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=822598 QFB56_RS01695 WP_005067086.1 350843..351370(+) (pilP) [Acinetobacter pittii strain AP8900]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCCGCGCCTGTTTTTACGCCTGTACCACAGTTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009R948

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

87.429

100

0.874
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714