Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QFX48_RS07625 Genome accession   NZ_CP123746
Coordinates   1577212..1577709 (-) Length   165 a.a.
NCBI ID   WP_304984668.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572212..1582709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX48_RS07600 gcvPB 1572374..1573846 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  QFX48_RS07605 gcvPA 1573839..1575185 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX48_RS07610 gcvT 1575205..1576296 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX48_RS07615 - 1576455..1576979 (-) 525 WP_001015117.1 shikimate kinase -
  QFX48_RS07620 - 1576969..1577115 (-) 147 WP_001789879.1 hypothetical protein -
  QFX48_RS07625 comGF 1577212..1577709 (-) 498 WP_304984668.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX48_RS07630 comGE 1577627..1577926 (-) 300 WP_304984667.1 competence protein ComGE Machinery gene
  QFX48_RS07635 comGD 1577913..1578359 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX48_RS07640 comGC 1578337..1578648 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX48_RS07645 comGB 1578662..1579732 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX48_RS07650 comGA 1579704..1580678 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX48_RS07655 - 1580730..1581353 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX48_RS07660 - 1581350..1581679 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QFX48_RS07665 - 1581679..1582665 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19178.95 Da        Isoelectric Point: 10.3044

>NTDB_id=822295 QFX48_RS07625 WP_304984668.1 1577212..1577709(-) (comGF) [Staphylococcus aureus strain 1.3]
MILSKVTNKFVLFQKIPLLIKRHIYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVKT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=822295 QFX48_RS07625 WP_304984668.1 1577212..1577709(-) (comGF) [Staphylococcus aureus strain 1.3]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATATATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGAAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

98.788

100

0.988
  comGF Staphylococcus aureus N315

95.152

100

0.952