Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   R2B38_RS35945 Genome accession   NZ_CP137549
Coordinates   8086605..8088680 (-) Length   691 a.a.
NCBI ID   WP_318019980.1    Uniprot ID   -
Organism   Streptomyces sp. N50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8081605..8093680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS35930 (R2B38_35930) opcA 8082850..8083785 (-) 936 WP_033285789.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  R2B38_RS35935 (R2B38_35935) zwf 8083782..8085443 (-) 1662 WP_318019978.1 glucose-6-phosphate dehydrogenase -
  R2B38_RS35940 (R2B38_35940) tal 8085440..8086585 (-) 1146 WP_318019979.1 transaldolase -
  R2B38_RS35945 (R2B38_35945) recP/tkt 8086605..8088680 (-) 2076 WP_318019980.1 transketolase Machinery gene
  R2B38_RS35950 (R2B38_35950) - 8088827..8089726 (+) 900 WP_318019981.1 AraC family transcriptional regulator -
  R2B38_RS35955 (R2B38_35955) - 8089875..8090903 (-) 1029 WP_318019982.1 methyltransferase -
  R2B38_RS35960 (R2B38_35960) - 8090949..8091365 (-) 417 WP_318019983.1 organic hydroperoxide resistance protein -
  R2B38_RS35965 (R2B38_35965) - 8091447..8092328 (-) 882 WP_318019984.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74418.92 Da        Isoelectric Point: 4.9175

>NTDB_id=822299 R2B38_RS35945 WP_318019980.1 8086605..8088680(-) (recP/tkt) [Streptomyces sp. N50]
MNAHTPDSFEWTDLDRRAVDTARVLAADAVQKVGNGHPGTAMALAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSL
TLYTQLYLAGYELELDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPETPEGESPFD
HTIWAIVSDGDLEEGISAEASSLAGHQKLGNLVFVYDDNHISIEGDTATAFSEDVLKRYEAYGWHTQRIEPAADGDVDPH
ALYTALKTAQAETERPSIIAMRTIIAWPAPNAQNTEAAHGSALGADEIAATKRVLGFDPEQSFEVADEVIAHSRKALDRG
AEAHSTWDKQLDTWRGARPERAKLFDRIVAGQLPEGWEQSLPVFEEGSSVATRAASGKVLQALGTVLPELWGGSADLAGS
NNTTIDKTSSFLPKGNPLPEADPYGRTIHFGIREHSMAAEMNGIALHGNTRVYGGTFLVFSDYMRNAVRLSALMQLPVTY
VWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETAIAWAEILKRHATKPAPHGLALTRQGVPTYAPNSDAAR
GGYVLKDSSTETPDVVLIATGSEVHLAVEAREQLEAEGVGTRVVSMPSVEWFEEQSREYRDSVLPPSVKARVAVEAGIGL
TWYRFVGDAGRIVSLEHFGASADAKTLFAEFGFTAENVAAAARESLAAARG

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=822299 R2B38_RS35945 WP_318019980.1 8086605..8088680(-) (recP/tkt) [Streptomyces sp. N50]
ATGAACGCGCACACACCTGACAGCTTCGAGTGGACCGATCTCGACCGTCGAGCCGTCGACACCGCCCGTGTCCTGGCCGC
TGACGCGGTCCAAAAGGTCGGCAACGGCCACCCGGGCACGGCGATGGCCCTGGCTCCCGCCGCGTACACGATCTTTCAGA
AGGTGATGCGTCACGACCCCGCGGATCCCGAGTGGACCGGCCGTGACCGTTTCGTCCTCTCCCCCGGCCACACCTCGCTG
ACGCTGTACACGCAGCTGTACCTCGCCGGGTACGAGCTGGAGCTGGACGACCTGAAGGCGTTCCGGACGCACGGCTCGAA
GACGCCTGGTCACCCCGAGTACGGGCACACGGCCGGTGTGGAGACCACGACAGGACCGCTCGGACAGGGCGTCGCCAACG
CGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCCGAGACCCCTGAGGGCGAGTCGCCCTTCGAC
CACACGATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCATCTCCGCCGAGGCCTCCTCCCTCGCGGGCCACCA
GAAGCTCGGCAACCTCGTCTTCGTCTACGACGACAACCACATCTCCATCGAGGGCGACACCGCGACCGCCTTCTCCGAGG
ACGTCCTGAAGCGGTACGAGGCCTACGGCTGGCACACCCAGCGCATCGAGCCCGCCGCCGACGGCGACGTCGACCCCCAC
GCGCTGTACACGGCGCTGAAGACGGCGCAGGCCGAGACCGAGCGCCCCTCGATCATCGCGATGCGCACGATCATCGCCTG
GCCCGCCCCGAACGCGCAGAACACCGAGGCCGCCCACGGCTCCGCGCTCGGCGCCGACGAGATCGCCGCCACCAAGCGCG
TCCTCGGCTTCGACCCGGAGCAGTCCTTCGAGGTCGCCGACGAGGTCATCGCCCACAGCCGCAAGGCCCTGGACCGGGGC
GCCGAGGCGCACTCGACCTGGGACAAGCAGCTCGACACCTGGCGCGGCGCCCGGCCCGAGCGCGCGAAGCTCTTCGACCG
GATCGTCGCCGGTCAGCTCCCCGAGGGCTGGGAGCAGTCCCTGCCGGTCTTCGAGGAGGGCTCCTCCGTCGCCACCCGCG
CCGCCTCCGGCAAGGTCCTCCAGGCACTTGGAACGGTCCTGCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCCGGCTCG
AACAACACCACCATCGACAAGACCTCGTCCTTCCTCCCGAAGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCGTAC
GATCCACTTCGGTATTCGCGAGCACTCGATGGCGGCCGAGATGAACGGGATCGCCCTGCACGGCAACACCCGTGTCTACG
GCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTGCGCCTCTCCGCGCTGATGCAGCTCCCGGTGACGTAC
GTCTGGACCCACGACTCCATCGGTCTCGGCGAGGACGGCCCCACCCACCAGCCGGTCGAGCACCTCGCCTCGCTGCGCGC
CATCCCGGGCCTGAACATCGTGCGCCCGGCCGACGCCAACGAGACCGCGATCGCCTGGGCCGAGATCCTCAAGCGGCACG
CCACGAAGCCGGCCCCGCACGGCCTCGCGCTGACCCGTCAGGGCGTGCCCACCTACGCGCCCAACTCCGATGCTGCGCGC
GGTGGTTACGTCCTCAAGGACTCCTCCACCGAGACCCCGGACGTCGTGCTCATCGCGACCGGTTCCGAGGTGCACCTCGC
CGTCGAGGCGCGGGAGCAGCTGGAGGCCGAGGGCGTGGGTACCCGGGTGGTGTCGATGCCGTCCGTGGAGTGGTTCGAGG
AGCAGTCGCGCGAGTACCGCGACAGCGTCCTTCCGCCGTCCGTGAAGGCCCGCGTTGCGGTCGAGGCCGGGATCGGTCTC
ACGTGGTACCGGTTCGTGGGTGACGCAGGACGCATCGTCTCCCTCGAACACTTCGGCGCCTCCGCCGATGCCAAGACCCT
GTTCGCCGAGTTCGGTTTCACGGCCGAGAACGTCGCCGCCGCAGCACGGGAATCCCTTGCCGCCGCGCGCGGTTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(570-678)

Transketolase, pyrimidine binding domain (Transket_pyr)

(369-547)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(15-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.37

97.685

0.453