Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R2B38_RS34375 | Genome accession | NZ_CP137549 |
| Coordinates | 7711579..7714104 (-) | Length | 841 a.a. |
| NCBI ID | WP_318019702.1 | Uniprot ID | - |
| Organism | Streptomyces sp. N50 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 7706579..7719104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2B38_RS34360 (R2B38_34360) | - | 7707109..7708677 (-) | 1569 | WP_318019699.1 | CocE/NonD family hydrolase | - |
| R2B38_RS34365 (R2B38_34365) | - | 7708794..7709549 (-) | 756 | WP_318019700.1 | hypothetical protein | - |
| R2B38_RS34370 (R2B38_34370) | ggt | 7709692..7711491 (+) | 1800 | WP_318019701.1 | gamma-glutamyltransferase | - |
| R2B38_RS34375 (R2B38_34375) | clpC | 7711579..7714104 (-) | 2526 | WP_318019702.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| R2B38_RS34380 (R2B38_34380) | map | 7714256..7715026 (-) | 771 | WP_318019703.1 | type I methionyl aminopeptidase | - |
| R2B38_RS34385 (R2B38_34385) | - | 7715059..7715310 (+) | 252 | WP_019062010.1 | helix-turn-helix domain-containing protein | - |
| R2B38_RS34390 (R2B38_34390) | - | 7715526..7717133 (+) | 1608 | WP_318019704.1 | hypothetical protein | - |
| R2B38_RS34395 (R2B38_34395) | - | 7717397..7718239 (+) | 843 | WP_318019705.1 | nitrilase-related carbon-nitrogen hydrolase | - |
Sequence
Protein
Download Length: 841 a.a. Molecular weight: 91664.58 Da Isoelectric Point: 4.9352
>NTDB_id=822296 R2B38_RS34375 WP_318019702.1 7711579..7714104(-) (clpC) [Streptomyces sp. N50]
MTSGYTDPENDPFGEFLARFFGGSAPPGPRHVDIGRLLSQPARDLVKGAAQYAAEHGSHDLDTQHLLRAALSAEPTRGLL
TRAGADPDSLAAEIDERSGPAHTPDGTSLALTPAVKRALLDAHDLARAGGTGYIGPEHVLGALAANPDSAAGHILNAARY
SPTGLPPETPEGIQTAHPDQPRPTTTPTLDKYSRDLTDLARHGRIDPVIGRDEEIEQTIEVLSRRGKNNPVLIGDAGVGK
TAIVEGLAQRITDGDVPDVLVGRRVVALDLTGVVAGTRFRGDFEERLTNIVGEIRAHSDELIVFIDELHTVVGAGGGGEG
GSMDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPSVPDAIEILRGLRDRYEAHHQVRYTDEALV
AAVELSDRYLTDRRLPDKAIDLIDQAGARVRLRARTKGTDVRALEREMEQLARDKDQAAADEDYEKATQLRDRIAELKVR
LAEAGGEDQGDEGQNLEVTGEAIAEVVSRQTGIPVSSLTAEEKDRLLGLEEHLHRRVVGQEEAVRVVSDAVLRSRAGLAS
PDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSL
LLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEAITRRGAGIGFGPGGADADEEARREQILRP
LREHFRPEFLNRIDEIVVFRQLTAEQLRLITELLLEHTRRLLHAQGITVTFTDPAVDWLSRQGYQPEYGARPLRRTIQRE
VDNQLSRLLLDGTVAEGDQVTVDAEGDHLAFNRQNQSSTAQ
MTSGYTDPENDPFGEFLARFFGGSAPPGPRHVDIGRLLSQPARDLVKGAAQYAAEHGSHDLDTQHLLRAALSAEPTRGLL
TRAGADPDSLAAEIDERSGPAHTPDGTSLALTPAVKRALLDAHDLARAGGTGYIGPEHVLGALAANPDSAAGHILNAARY
SPTGLPPETPEGIQTAHPDQPRPTTTPTLDKYSRDLTDLARHGRIDPVIGRDEEIEQTIEVLSRRGKNNPVLIGDAGVGK
TAIVEGLAQRITDGDVPDVLVGRRVVALDLTGVVAGTRFRGDFEERLTNIVGEIRAHSDELIVFIDELHTVVGAGGGGEG
GSMDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPSVPDAIEILRGLRDRYEAHHQVRYTDEALV
AAVELSDRYLTDRRLPDKAIDLIDQAGARVRLRARTKGTDVRALEREMEQLARDKDQAAADEDYEKATQLRDRIAELKVR
LAEAGGEDQGDEGQNLEVTGEAIAEVVSRQTGIPVSSLTAEEKDRLLGLEEHLHRRVVGQEEAVRVVSDAVLRSRAGLAS
PDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSL
LLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEAITRRGAGIGFGPGGADADEEARREQILRP
LREHFRPEFLNRIDEIVVFRQLTAEQLRLITELLLEHTRRLLHAQGITVTFTDPAVDWLSRQGYQPEYGARPLRRTIQRE
VDNQLSRLLLDGTVAEGDQVTVDAEGDHLAFNRQNQSSTAQ
Nucleotide
Download Length: 2526 bp
>NTDB_id=822296 R2B38_RS34375 WP_318019702.1 7711579..7714104(-) (clpC) [Streptomyces sp. N50]
ATGACCAGCGGCTACACAGACCCCGAAAACGACCCCTTCGGCGAGTTCCTGGCCCGCTTCTTCGGAGGATCAGCCCCACC
CGGCCCACGGCACGTGGATATCGGCCGCCTACTGAGCCAACCGGCCAGGGACCTCGTCAAAGGCGCCGCCCAGTACGCCG
CGGAACACGGCAGCCACGACCTCGACACCCAGCACCTCCTCCGCGCCGCCCTCTCCGCGGAGCCCACCCGCGGCCTCCTC
ACGCGGGCAGGCGCGGACCCCGACTCCCTCGCCGCGGAGATCGACGAGCGCTCGGGACCCGCCCACACCCCGGACGGCAC
GTCCCTCGCCCTCACCCCCGCCGTAAAACGCGCCCTCCTGGACGCCCACGACCTGGCAAGAGCGGGCGGCACCGGATACA
TCGGCCCCGAACACGTCCTGGGCGCGCTCGCCGCGAACCCGGACTCCGCCGCCGGCCACATCCTGAACGCGGCCCGCTAC
TCCCCCACGGGCCTGCCACCCGAGACCCCGGAGGGCATCCAGACCGCCCATCCCGACCAGCCCCGCCCCACCACCACCCC
CACCCTCGACAAGTACAGCCGCGACCTCACCGACCTGGCCCGCCACGGCCGTATCGACCCGGTGATCGGCCGCGACGAGG
AGATCGAGCAGACCATCGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCGGTGCTGATCGGCGACGCGGGCGTAGGCAAG
ACCGCGATCGTGGAGGGCCTCGCGCAGCGCATCACCGACGGCGATGTCCCGGACGTGCTGGTCGGCCGCCGCGTGGTCGC
CCTCGACCTGACCGGCGTCGTCGCGGGCACCCGTTTCCGCGGCGACTTCGAGGAGCGGCTGACGAACATCGTCGGCGAGA
TCCGCGCCCACTCGGACGAACTGATCGTGTTCATCGACGAGTTGCACACCGTGGTCGGCGCGGGCGGAGGCGGCGAGGGC
GGCTCCATGGACGCCGGCAACATCCTCAAACCGGCCCTGGCACGCGGCGAGTTGCACATCGTGGGCGCTACGACGCTTGA
GGAGTACCGCCGGATCGAGAAGGACGCGGCGCTGGCCCGCAGGTTCCAGCCGATCCTCGTGCCGGAACCGTCCGTCCCGG
ACGCGATCGAGATCCTGCGCGGCCTGCGCGACCGCTACGAGGCTCACCACCAAGTCCGCTACACCGACGAGGCGTTGGTG
GCGGCCGTGGAACTGTCCGACCGCTATCTCACCGACCGCCGGCTCCCCGACAAGGCGATCGACCTGATCGACCAGGCCGG
TGCCCGGGTACGGCTGCGGGCCCGCACGAAGGGCACGGACGTACGGGCGCTGGAGCGCGAGATGGAGCAGCTCGCCCGGG
ACAAGGACCAGGCGGCGGCCGACGAGGACTACGAGAAGGCGACGCAACTCCGCGACCGTATCGCCGAGTTGAAGGTACGG
CTGGCCGAGGCCGGCGGCGAGGACCAGGGCGACGAGGGACAGAACCTGGAGGTCACCGGCGAGGCGATCGCCGAGGTCGT
GTCCCGCCAGACCGGTATCCCGGTGAGCAGTCTCACGGCGGAGGAGAAGGACCGGCTGCTCGGTCTGGAGGAGCATCTGC
ACCGGCGGGTCGTCGGCCAGGAGGAGGCGGTACGGGTCGTGTCGGACGCGGTGCTGCGCTCCCGCGCCGGCCTGGCGAGC
CCCGACCGGCCGATCGGCAGCTTCCTCTTCCTGGGCCCAACCGGCGTCGGCAAGACGGAACTTGCCCGTGCGCTCGCCGA
GGCCCTGTTCGGCAGCGAGGACCGCATGGTCCGCCTGGACATGAGCGAGTACCAGGAACGGCACACCGTCAGCCGTCTCG
TCGGCGCCCCGCCCGGCTACGTCGGCCACGAGGAAGCCGGTCAACTCACCGAGGTGGTACGCCGACACCCGTACTCGCTG
CTCCTGCTCGACGAGGTCGAGAAGGCGCACCCGGACGTGTTCAACATCCTGCTCCAGGTGCTGGACGACGGCCGGTTGAC
CGACTCGCAGGGCCGGACGGTCGACTTCACCAACACGGTGATCGTGATGACTAGCAACCTCGGCTCCGAGGCGATCACCC
GGCGCGGCGCCGGCATCGGCTTCGGCCCGGGCGGCGCCGACGCGGACGAGGAGGCCCGGCGCGAACAGATCCTGCGCCCC
CTGCGGGAGCACTTCCGCCCCGAGTTCCTCAACCGCATCGACGAGATCGTCGTCTTCCGCCAACTCACCGCCGAGCAACT
ACGCCTGATCACCGAGCTGTTGCTCGAACACACCCGCCGCCTCCTGCACGCACAGGGCATCACGGTCACGTTCACGGACC
CGGCCGTCGACTGGCTCTCCCGCCAGGGCTACCAACCCGAGTACGGCGCCCGCCCACTCCGCCGCACCATCCAGCGCGAG
GTCGACAACCAGCTGTCACGACTGCTTCTCGACGGCACGGTCGCGGAGGGAGATCAGGTGACGGTGGACGCAGAGGGCGA
TCACTTGGCGTTCAACAGGCAGAACCAGTCAAGCACCGCTCAGTGA
ATGACCAGCGGCTACACAGACCCCGAAAACGACCCCTTCGGCGAGTTCCTGGCCCGCTTCTTCGGAGGATCAGCCCCACC
CGGCCCACGGCACGTGGATATCGGCCGCCTACTGAGCCAACCGGCCAGGGACCTCGTCAAAGGCGCCGCCCAGTACGCCG
CGGAACACGGCAGCCACGACCTCGACACCCAGCACCTCCTCCGCGCCGCCCTCTCCGCGGAGCCCACCCGCGGCCTCCTC
ACGCGGGCAGGCGCGGACCCCGACTCCCTCGCCGCGGAGATCGACGAGCGCTCGGGACCCGCCCACACCCCGGACGGCAC
GTCCCTCGCCCTCACCCCCGCCGTAAAACGCGCCCTCCTGGACGCCCACGACCTGGCAAGAGCGGGCGGCACCGGATACA
TCGGCCCCGAACACGTCCTGGGCGCGCTCGCCGCGAACCCGGACTCCGCCGCCGGCCACATCCTGAACGCGGCCCGCTAC
TCCCCCACGGGCCTGCCACCCGAGACCCCGGAGGGCATCCAGACCGCCCATCCCGACCAGCCCCGCCCCACCACCACCCC
CACCCTCGACAAGTACAGCCGCGACCTCACCGACCTGGCCCGCCACGGCCGTATCGACCCGGTGATCGGCCGCGACGAGG
AGATCGAGCAGACCATCGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCGGTGCTGATCGGCGACGCGGGCGTAGGCAAG
ACCGCGATCGTGGAGGGCCTCGCGCAGCGCATCACCGACGGCGATGTCCCGGACGTGCTGGTCGGCCGCCGCGTGGTCGC
CCTCGACCTGACCGGCGTCGTCGCGGGCACCCGTTTCCGCGGCGACTTCGAGGAGCGGCTGACGAACATCGTCGGCGAGA
TCCGCGCCCACTCGGACGAACTGATCGTGTTCATCGACGAGTTGCACACCGTGGTCGGCGCGGGCGGAGGCGGCGAGGGC
GGCTCCATGGACGCCGGCAACATCCTCAAACCGGCCCTGGCACGCGGCGAGTTGCACATCGTGGGCGCTACGACGCTTGA
GGAGTACCGCCGGATCGAGAAGGACGCGGCGCTGGCCCGCAGGTTCCAGCCGATCCTCGTGCCGGAACCGTCCGTCCCGG
ACGCGATCGAGATCCTGCGCGGCCTGCGCGACCGCTACGAGGCTCACCACCAAGTCCGCTACACCGACGAGGCGTTGGTG
GCGGCCGTGGAACTGTCCGACCGCTATCTCACCGACCGCCGGCTCCCCGACAAGGCGATCGACCTGATCGACCAGGCCGG
TGCCCGGGTACGGCTGCGGGCCCGCACGAAGGGCACGGACGTACGGGCGCTGGAGCGCGAGATGGAGCAGCTCGCCCGGG
ACAAGGACCAGGCGGCGGCCGACGAGGACTACGAGAAGGCGACGCAACTCCGCGACCGTATCGCCGAGTTGAAGGTACGG
CTGGCCGAGGCCGGCGGCGAGGACCAGGGCGACGAGGGACAGAACCTGGAGGTCACCGGCGAGGCGATCGCCGAGGTCGT
GTCCCGCCAGACCGGTATCCCGGTGAGCAGTCTCACGGCGGAGGAGAAGGACCGGCTGCTCGGTCTGGAGGAGCATCTGC
ACCGGCGGGTCGTCGGCCAGGAGGAGGCGGTACGGGTCGTGTCGGACGCGGTGCTGCGCTCCCGCGCCGGCCTGGCGAGC
CCCGACCGGCCGATCGGCAGCTTCCTCTTCCTGGGCCCAACCGGCGTCGGCAAGACGGAACTTGCCCGTGCGCTCGCCGA
GGCCCTGTTCGGCAGCGAGGACCGCATGGTCCGCCTGGACATGAGCGAGTACCAGGAACGGCACACCGTCAGCCGTCTCG
TCGGCGCCCCGCCCGGCTACGTCGGCCACGAGGAAGCCGGTCAACTCACCGAGGTGGTACGCCGACACCCGTACTCGCTG
CTCCTGCTCGACGAGGTCGAGAAGGCGCACCCGGACGTGTTCAACATCCTGCTCCAGGTGCTGGACGACGGCCGGTTGAC
CGACTCGCAGGGCCGGACGGTCGACTTCACCAACACGGTGATCGTGATGACTAGCAACCTCGGCTCCGAGGCGATCACCC
GGCGCGGCGCCGGCATCGGCTTCGGCCCGGGCGGCGCCGACGCGGACGAGGAGGCCCGGCGCGAACAGATCCTGCGCCCC
CTGCGGGAGCACTTCCGCCCCGAGTTCCTCAACCGCATCGACGAGATCGTCGTCTTCCGCCAACTCACCGCCGAGCAACT
ACGCCTGATCACCGAGCTGTTGCTCGAACACACCCGCCGCCTCCTGCACGCACAGGGCATCACGGTCACGTTCACGGACC
CGGCCGTCGACTGGCTCTCCCGCCAGGGCTACCAACCCGAGTACGGCGCCCGCCCACTCCGCCGCACCATCCAGCGCGAG
GTCGACAACCAGCTGTCACGACTGCTTCTCGACGGCACGGTCGCGGAGGGAGATCAGGTGACGGTGGACGCAGAGGGCGA
TCACTTGGCGTTCAACAGGCAGAACCAGTCAAGCACCGCTCAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.817 |
95.482 |
0.466 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.326 |
95.482 |
0.442 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.139 |
99.405 |
0.439 |
| clpC | Streptococcus pneumoniae Rx1 |
43.832 |
99.287 |
0.435 |
| clpC | Streptococcus pneumoniae D39 |
43.832 |
99.287 |
0.435 |
| clpC | Streptococcus mutans UA159 |
43.879 |
98.098 |
0.43 |
| clpC | Streptococcus thermophilus LMD-9 |
47.354 |
89.893 |
0.426 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.561 |
89.893 |
0.419 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.074 |
80.499 |
0.403 |
| clpE | Streptococcus mutans UA159 |
53.612 |
74.078 |
0.397 |
| clpE | Streptococcus pneumoniae TIGR4 |
50.861 |
75.981 |
0.386 |
| clpE | Streptococcus pneumoniae Rx1 |
50.861 |
75.981 |
0.386 |
| clpE | Streptococcus pneumoniae D39 |
50.861 |
75.981 |
0.386 |
| clpE | Streptococcus pneumoniae R6 |
50.861 |
75.981 |
0.386 |