Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R9C51_RS06600 Genome accession   NZ_AP026921
Coordinates   1282164..1282733 (-) Length   189 a.a.
NCBI ID   WP_075219010.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700027     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277164..1287733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9C51_RS06570 (PC0027_12920) - 1277463..1278398 (+) 936 WP_000401770.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  R9C51_RS06575 (PC0027_12930) - 1278494..1278736 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R9C51_RS06580 (PC0027_12940) - 1278793..1279011 (-) 219 WP_016398454.1 hypothetical protein -
  R9C51_RS06585 - 1279008..1279595 (-) 588 Protein_1304 transposase -
  R9C51_RS06590 (PC0027_12970) gdhA 1280129..1281475 (+) 1347 WP_050210433.1 NADP-specific glutamate dehydrogenase -
  R9C51_RS06595 (PC0027_12980) - 1281981..1282151 (-) 171 WP_000711943.1 hypothetical protein -
  R9C51_RS06600 (PC0027_12990) comA 1282164..1282733 (-) 570 WP_075219010.1 ATP-binding cassette domain-containing protein Regulator
  R9C51_RS06610 - 1284012..1284708 (+) 697 Protein_1309 IS630 family transposase -
  R9C51_RS06615 (PC0027_13040) - 1284753..1285202 (-) 450 WP_000424224.1 YhcH/YjgK/YiaL family protein -
  R9C51_RS06620 (PC0027_13050) - 1285707..1286162 (-) 456 WP_001000318.1 HIT family protein -
  R9C51_RS06625 (PC0027_13060) - 1286184..1287644 (-) 1461 WP_000272434.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21129.56 Da        Isoelectric Point: 8.4271

>NTDB_id=82205 R9C51_RS06600 WP_075219010.1 1282164..1282733(-) (comA) [Streptococcus pneumoniae strain PZ900700027]
MPSGLYKIDTGKVLFDGININQIDKKILSQNLGVVPQDSFLLNRSILDNITLKNEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIFVM
KGGKIVESGNHKYLMELGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=82205 R9C51_RS06600 WP_075219010.1 1282164..1282733(-) (comA) [Streptococcus pneumoniae strain PZ900700027]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTATAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGA
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGAGCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

41.489

99.471

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus mitis NCTC 12261

41.398

98.413

0.407
  comA Streptococcus mitis SK321

40.86

98.413

0.402
  comA Streptococcus pneumoniae Rx1

40.323

98.413

0.397
  comA Streptococcus pneumoniae D39

40.323

98.413

0.397
  comA Streptococcus pneumoniae R6

40.323

98.413

0.397
  comA Streptococcus pneumoniae TIGR4

39.247

98.413

0.386

Multiple sequence alignment