Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QEJ31_RS06985 Genome accession   NZ_CP123622
Coordinates   1604133..1604624 (+) Length   163 a.a.
NCBI ID   WP_280593067.1    Uniprot ID   A0AA95JYT4
Organism   Pigmentibacter sp. JX0631     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1599133..1609624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEJ31_RS06965 (QEJ31_06965) - 1599497..1599901 (-) 405 WP_280593063.1 chorismate mutase -
  QEJ31_RS06970 (QEJ31_06970) cysS 1599918..1601393 (-) 1476 WP_280593064.1 cysteine--tRNA ligase -
  QEJ31_RS06975 (QEJ31_06975) dnaJ 1601399..1602520 (-) 1122 WP_280593065.1 molecular chaperone DnaJ -
  QEJ31_RS06980 (QEJ31_06980) lpxC 1602778..1603743 (-) 966 WP_280593066.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  QEJ31_RS06985 (QEJ31_06985) ssb 1604133..1604624 (+) 492 WP_280593067.1 single-stranded DNA-binding protein Machinery gene
  QEJ31_RS06990 (QEJ31_06990) - 1604647..1605885 (-) 1239 WP_280593068.1 neprosin family prolyl endopeptidase -
  QEJ31_RS06995 (QEJ31_06995) - 1606162..1606659 (-) 498 WP_280593069.1 hypothetical protein -
  QEJ31_RS07000 (QEJ31_07000) - 1606686..1607702 (-) 1017 WP_280593070.1 hypothetical protein -
  QEJ31_RS07005 (QEJ31_07005) - 1607747..1609432 (-) 1686 WP_280593071.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18519.40 Da        Isoelectric Point: 6.4748

>NTDB_id=821802 QEJ31_RS06985 WP_280593067.1 1604133..1604624(+) (ssb) [Pigmentibacter sp. JX0631]
MSGVNKVILVGRLGQEPDMRSTTSGQQVCTLSIATSETWTKDGNKEERTEWHRVVLWGRQAELAHKYLKKGRLVYIEGKL
QTRSWQDQQGQKRYTTEIVANNMQFLESMNSNQGRDMNDIPPANDINDYYSGPSNYDSTSPTRNSSSSSFSSNSRPMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=821802 QEJ31_RS06985 WP_280593067.1 1604133..1604624(+) (ssb) [Pigmentibacter sp. JX0631]
ATGTCCGGAGTTAATAAAGTCATTCTTGTCGGAAGGTTGGGACAAGAACCTGATATGCGCAGCACAACCAGCGGACAACA
AGTCTGTACTTTAAGTATTGCTACAAGCGAAACTTGGACGAAAGATGGAAATAAAGAAGAGAGAACAGAATGGCACAGAG
TTGTATTATGGGGTCGTCAAGCCGAACTAGCTCATAAGTATTTGAAAAAGGGCCGACTTGTTTACATAGAAGGAAAACTT
CAAACTCGCTCTTGGCAAGATCAGCAGGGACAAAAAAGATATACAACAGAAATTGTAGCAAATAACATGCAATTTTTAGA
AAGTATGAATTCTAATCAAGGCCGTGATATGAATGATATCCCACCAGCTAATGATATAAATGACTACTATTCTGGTCCTA
GTAATTATGACTCAACTTCTCCTACCAGAAATAGTTCTTCATCTTCATTCAGTAGCAACTCTAGACCTATGGATGATGAC
ATCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.515
  ssb Vibrio cholerae strain A1552

43.678

100

0.466
  ssb Neisseria gonorrhoeae MS11

39.08

100

0.417
  ssb Neisseria meningitidis MC58

37.209

100

0.393
  ssb Latilactobacillus sakei subsp. sakei 23K

34.503

100

0.362