Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFH15_RS01915 Genome accession   NZ_CP123618
Coordinates   367522..367974 (-) Length   150 a.a.
NCBI ID   WP_012340854.1    Uniprot ID   W0R5B1
Organism   Pasteurella multocida strain 19BRD-057     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 362522..372974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFH15_RS01880 (QFH15_01880) - 362607..362978 (-) 372 WP_006248864.1 DUF1304 domain-containing protein -
  QFH15_RS01885 (QFH15_01885) - 363197..363940 (-) 744 WP_223132039.1 DUF305 domain-containing protein -
  QFH15_RS01890 (QFH15_01890) cueR 364340..364726 (+) 387 WP_223132040.1 Cu(I)-responsive transcriptional regulator -
  QFH15_RS01895 (QFH15_01895) - 364808..365422 (-) 615 WP_223132041.1 cation diffusion facilitator family transporter -
  QFH15_RS01900 (QFH15_01900) - 365494..365892 (+) 399 WP_223132042.1 MerR family transcriptional regulator -
  QFH15_RS01905 (QFH15_01905) - 365913..366266 (+) 354 Protein_358 arsenical-resistance protein -
  QFH15_RS01910 (QFH15_01910) - 366319..366945 (-) 627 Protein_359 zinc-dependent alcohol dehydrogenase family protein -
  QFH15_RS01915 (QFH15_01915) ssb 367522..367974 (-) 453 WP_012340854.1 single-stranded DNA-binding protein Machinery gene
  QFH15_RS01920 (QFH15_01920) - 368330..368815 (-) 486 WP_012340855.1 DUF3158 family protein -
  QFH15_RS01925 (QFH15_01925) - 368824..369582 (-) 759 WP_012340856.1 PFL_4669 family integrating conjugative element protein -
  QFH15_RS01930 (QFH15_01930) - 369761..370951 (-) 1191 WP_014325837.1 STY4528 family pathogenicity island replication protein -
  QFH15_RS01935 (QFH15_01935) - 371110..371667 (-) 558 WP_012340858.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17204.13 Da        Isoelectric Point: 5.2733

>NTDB_id=821686 QFH15_RS01915 WP_012340854.1 367522..367974(-) (ssb) [Pasteurella multocida strain 19BRD-057]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=821686 QFH15_RS01915 WP_012340854.1 367522..367974(-) (ssb) [Pasteurella multocida strain 19BRD-057]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0R5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.76
  ssb Vibrio cholerae strain A1552

51.724

100

0.6
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.527
  ssb Neisseria meningitidis MC58

45.087

100

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.818

100

0.373