Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFB85_RS01550 Genome accession   NZ_CP123607
Coordinates   331739..332269 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain RMCH-M16-N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 326739..337269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB85_RS01535 (QFB85_01535) maa 326762..327319 (+) 558 WP_004936785.1 maltose O-acetyltransferase -
  QFB85_RS01540 (QFB85_01540) - 327351..328403 (-) 1053 WP_004936787.1 NAD(P)-dependent alcohol dehydrogenase -
  QFB85_RS01545 (QFB85_01545) uvrA 328633..331461 (-) 2829 WP_265261114.1 excinuclease ABC subunit UvrA -
  QFB85_RS01550 (QFB85_01550) ssb 331739..332269 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QFB85_RS01555 (QFB85_01555) - 332355..333311 (-) 957 WP_049189118.1 cyclase family protein -
  QFB85_RS01560 (QFB85_01560) - 333532..333744 (-) 213 WP_004936800.1 DUF1471 domain-containing protein -
  QFB85_RS01565 (QFB85_01565) - 333978..334727 (-) 750 WP_004936803.1 3-oxoacyl-ACP reductase family protein -
  QFB85_RS01570 (QFB85_01570) - 334855..335772 (+) 918 WP_033631981.1 LysR family transcriptional regulator -
  QFB85_RS01575 (QFB85_01575) - 335828..336088 (-) 261 WP_004936809.1 YdgH/BhsA/McbA-like domain containing protein -
  QFB85_RS01580 (QFB85_01580) - 336284..336727 (+) 444 WP_004936812.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=821509 QFB85_RS01550 WP_004936793.1 331739..332269(+) (ssb) [Serratia marcescens strain RMCH-M16-N]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=821509 QFB85_RS01550 WP_004936793.1 331739..332269(+) (ssb) [Serratia marcescens strain RMCH-M16-N]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGTGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364