Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFB82_RS18425 Genome accession   NZ_CP123597
Coordinates   3824911..3825444 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens strain RMCH-M26-N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3819911..3830444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB82_RS18390 (QFB82_18390) - 3820341..3820784 (-) 444 WP_033631983.1 lipocalin-like domain-containing protein -
  QFB82_RS18395 (QFB82_18395) - 3820980..3821240 (+) 261 WP_033631982.1 YdgH/BhsA/McbA-like domain containing protein -
  QFB82_RS18400 (QFB82_18400) - 3821296..3822213 (-) 918 WP_033631981.1 LysR family transcriptional regulator -
  QFB82_RS18405 (QFB82_18405) - 3822341..3823090 (+) 750 WP_143778449.1 3-oxoacyl-ACP reductase family protein -
  QFB82_RS18410 (QFB82_18410) - 3823141..3823617 (-) 477 WP_049299924.1 Rrf2 family transcriptional regulator -
  QFB82_RS18415 (QFB82_18415) - 3823775..3824155 (+) 381 WP_049299925.1 hypothetical protein -
  QFB82_RS18420 (QFB82_18420) - 3824167..3824862 (+) 696 WP_049299926.1 class I SAM-dependent methyltransferase -
  QFB82_RS18425 (QFB82_18425) ssb 3824911..3825444 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QFB82_RS18430 (QFB82_18430) uvrA 3825722..3828550 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  QFB82_RS18435 (QFB82_18435) - 3828780..3829832 (+) 1053 WP_280597716.1 NAD(P)-dependent alcohol dehydrogenase -
  QFB82_RS18440 (QFB82_18440) maa 3829864..3830421 (-) 558 WP_021505134.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=821472 QFB82_RS18425 WP_033654707.1 3824911..3825444(-) (ssb) [Serratia marcescens strain RMCH-M26-N]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=821472 QFB82_RS18425 WP_033654707.1 3824911..3825444(-) (ssb) [Serratia marcescens strain RMCH-M26-N]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGTCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCTGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAACCTCAGCAGCCACAGGGCGGCAACCAGTTTAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362