Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QE177_RS11910 Genome accession   NZ_CP123499
Coordinates   2673938..2674474 (-) Length   178 a.a.
NCBI ID   WP_280549903.1    Uniprot ID   A0AA95GJ84
Organism   Arsenophonus sp. aPb     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2668938..2679474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE177_RS11895 (QE177_11895) - 2669912..2670913 (-) 1002 WP_280549896.1 agmatine deiminase family protein -
  QE177_RS11900 (QE177_11900) - 2671068..2671664 (+) 597 WP_180559504.1 TetR/AcrR family transcriptional regulator -
  QE177_RS11905 (QE177_11905) - 2671876..2673267 (-) 1392 WP_280549901.1 HEPN domain-containing protein -
  QE177_RS11910 (QE177_11910) ssb 2673938..2674474 (-) 537 WP_280549903.1 single-stranded DNA-binding protein Machinery gene
  QE177_RS11915 (QE177_11915) uvrA 2674753..2677587 (+) 2835 WP_280549905.1 excinuclease ABC subunit UvrA -
  QE177_RS11920 (QE177_11920) - 2678094..2678579 (+) 486 WP_280549907.1 phenolic acid decarboxylase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19277.38 Da        Isoelectric Point: 5.2420

>NTDB_id=821217 QE177_RS11910 WP_280549903.1 2673938..2674474(-) (ssb) [Arsenophonus sp. aPb]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQNGQDRYSTEVVVNIGGTMQMLGARGGSQEGMSQNNPASGWGQPQQPQQTQQFSGNAPASAPAAHSGKT
APATPAEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=821217 QE177_RS11910 WP_280549903.1 2673938..2674474(-) (ssb) [Arsenophonus sp. aPb]
ATGGCCAGCAGAGGCGTTAACAAAGTCATACTTATCGGCAACTTGGGACAAGATCCTGAAATTCGTTATATGCCAAATGG
TGGTGCGGTTGCGAATCTTACGCTGGCAACCTCTGAAAGTTGGCGTGATAAGCAAAGTGGCGAAATGCGGGAAAAAACAG
AATGGCACCGTGTTGTGATCTTTGGCAAGCTGGCGGAAGTGGCAGGTGAATATTTACGTAAAGGTTCACAAGTTTATATT
GAAGGCTCACTACAAACCCGTAAATGGCAAGATCAAAATGGCCAGGATCGCTACTCTACCGAAGTGGTGGTGAATATTGG
TGGAACCATGCAAATGTTAGGCGCGCGTGGTGGCTCACAAGAGGGTATGTCACAAAATAATCCAGCCAGTGGCTGGGGAC
AACCACAACAGCCACAACAAACTCAGCAGTTTAGTGGTAACGCACCAGCATCAGCGCCAGCCGCCCATTCTGGTAAAACC
GCTCCCGCGACACCGGCTGAACCACCAATGGATTTTGATGATGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.478

100

0.708
  ssb Glaesserella parasuis strain SC1401

56.915

100

0.601
  ssb Neisseria meningitidis MC58

46.961

100

0.478
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.478
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.555

100

0.371