Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QE177_RS00815 Genome accession   NZ_CP123499
Coordinates   199799..201325 (-) Length   508 a.a.
NCBI ID   WP_280550876.1    Uniprot ID   A0AA95GGI9
Organism   Arsenophonus sp. aPb     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 194799..206325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE177_RS00805 (QE177_00805) hdfR 198485..199300 (-) 816 WP_280550875.1 HTH-type transcriptional regulator HdfR -
  QE177_RS00810 (QE177_00810) - 199418..199756 (+) 339 WP_026823483.1 DUF413 domain-containing protein -
  QE177_RS00815 (QE177_00815) comM 199799..201325 (-) 1527 WP_280550876.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QE177_RS00820 (QE177_00820) - 201795..201896 (+) 102 WP_135677408.1 IlvGEDA operon leader peptide -
  QE177_RS00825 (QE177_00825) ilvG 202023..203669 (+) 1647 WP_280550877.1 acetolactate synthase 2 catalytic subunit -
  QE177_RS00830 (QE177_00830) ilvM 203666..203926 (+) 261 WP_280550878.1 acetolactate synthase 2 small subunit -
  QE177_RS00835 (QE177_00835) - 203936..204862 (+) 927 WP_280550879.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55930.83 Da        Isoelectric Point: 9.7754

>NTDB_id=821207 QE177_RS00815 WP_280550876.1 199799..201325(-) (comM) [Arsenophonus sp. aPb]
MALAVIYTRASIGMHAPRVTVEAHISNGLPGLTLVGLPETAVREARDRVRSALINSGFQYPSKRITINLAPADLPKEGGR
YDLAIALAILAASEQITSIKLNQFEFLGELALSGQIRRITGVITAAQAALKNQRKLITSIENANELNLLPTESVYFCEHL
LAVCHFLHDQNTLPHNQEMPITNHKHTNITDINDVIGQQHAKRALEITAAGGHNLLLIGPPGTGKTMLANRLITLLPDLT
NQEALEVASIKSLCDISFDNEKWLTRPFRAPHHSASMAALIGGGSLPKPGEISLAHNGILFLDELAEFERKVLDALREPL
ESGEIAISRAKAKVNFPANIQLIAALNPSAMGHYKGIYNRANPKQILRYLAKISGPFLDRFDLSIEVPLLPLGTLSHSTP
TNETSFDIKQRVIQARKQQIERSGKINAKLNSKEATLFCKLKPNDALFLETTLNKLGLSIRAWGRILKVSRTIADLKQQQ
QIEKIDIIEAISYRSMDKLLIQLQKQIA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=821207 QE177_RS00815 WP_280550876.1 199799..201325(-) (comM) [Arsenophonus sp. aPb]
ATGGCACTAGCTGTTATTTACACCAGAGCTTCAATTGGTATGCATGCACCGCGAGTAACAGTTGAGGCACATATTAGTAA
TGGACTACCTGGACTTACTCTGGTAGGGTTGCCTGAAACAGCTGTAAGAGAAGCCCGTGATCGTGTTAGAAGTGCTTTAA
TAAATAGTGGTTTTCAGTATCCATCTAAAAGAATAACCATCAATTTAGCGCCTGCAGATCTGCCAAAAGAAGGCGGGCGT
TACGATCTAGCTATCGCACTTGCCATTTTAGCGGCATCGGAACAAATTACATCGATAAAATTAAATCAATTCGAATTCCT
TGGCGAATTAGCACTTTCTGGCCAAATTCGTCGAATAACAGGGGTAATCACCGCAGCACAAGCTGCATTAAAAAATCAAC
GTAAATTGATTACTTCGATAGAAAACGCAAATGAATTAAATTTGTTACCAACAGAAAGTGTCTATTTTTGTGAACATTTA
CTCGCTGTTTGTCATTTCTTACATGATCAAAATACTTTACCTCACAATCAAGAAATGCCTATTACCAACCATAAGCACAC
TAACATAACAGATATCAATGATGTTATTGGTCAACAGCACGCCAAGCGCGCATTAGAGATCACAGCCGCAGGAGGACATA
ATCTTTTATTGATTGGGCCACCAGGCACAGGTAAGACCATGCTTGCCAACCGCCTAATTACTCTCTTACCTGATCTCACC
AATCAAGAAGCGCTAGAGGTAGCTTCAATAAAAAGTTTGTGTGATATTTCATTTGATAACGAAAAATGGCTTACACGGCC
ATTTAGAGCTCCTCATCACAGTGCTTCTATGGCAGCATTGATCGGTGGCGGCAGTTTACCCAAACCTGGGGAAATATCTT
TAGCTCATAATGGTATTTTATTTCTTGATGAACTGGCCGAATTTGAACGAAAAGTGCTCGATGCACTTAGGGAACCACTA
GAATCTGGTGAAATAGCAATTTCACGTGCAAAAGCTAAAGTTAATTTTCCAGCTAATATTCAACTTATTGCCGCTTTAAA
TCCCAGCGCTATGGGTCACTATAAAGGTATATATAACCGAGCCAACCCAAAACAGATCCTCCGTTATCTAGCAAAGATAT
CTGGGCCATTCTTAGACCGTTTTGATCTCTCTATAGAGGTACCACTTTTACCACTAGGTACATTAAGCCATTCTACACCA
ACGAATGAAACCAGTTTCGATATAAAACAACGTGTTATACAAGCAAGAAAACAGCAAATTGAACGTTCGGGTAAAATTAA
TGCAAAACTAAATAGCAAAGAAGCCACACTTTTTTGTAAACTAAAACCGAATGACGCTCTTTTTTTAGAAACAACATTAA
ATAAACTTGGCCTCTCAATCAGAGCTTGGGGTCGTATATTGAAAGTTTCACGAACTATTGCTGATTTAAAACAGCAACAA
CAAATTGAAAAAATTGATATTATTGAAGCAATTAGCTATCGCAGTATGGATAAGCTACTTATTCAGTTACAAAAACAAAT
TGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.265

99.606

0.61
  comM Glaesserella parasuis strain SC1401

60.511

100

0.606
  comM Vibrio cholerae strain A1552

59.091

99.606

0.589
  comM Vibrio campbellii strain DS40M4

58.893

99.606

0.587
  comM Legionella pneumophila str. Paris

48.008

98.819

0.474
  comM Legionella pneumophila strain ERS1305867

48.008

98.819

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.059

99.606

0.449