Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QAO71_RS15710 Genome accession   NZ_CP123445
Coordinates   3360228..3361751 (+) Length   507 a.a.
NCBI ID   WP_280164852.1    Uniprot ID   -
Organism   Halopseudomonas sp. SMJS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3355228..3366751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS15680 (QAO71_15680) - 3356067..3356765 (+) 699 WP_348273400.1 HAD family hydrolase -
  QAO71_RS15685 (QAO71_15685) - 3356833..3357138 (-) 306 WP_036988960.1 hypothetical protein -
  QAO71_RS15690 (QAO71_15690) - 3357262..3357717 (-) 456 WP_280164851.1 hypothetical protein -
  QAO71_RS15695 (QAO71_15695) - 3357843..3359087 (-) 1245 WP_036988957.1 ammonium transporter -
  QAO71_RS15700 (QAO71_15700) glnK 3359141..3359479 (-) 339 WP_036988956.1 P-II family nitrogen regulator -
  QAO71_RS15705 (QAO71_15705) - 3359937..3360179 (+) 243 WP_036988954.1 accessory factor UbiK family protein -
  QAO71_RS15710 (QAO71_15710) comM 3360228..3361751 (+) 1524 WP_280164852.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QAO71_RS15715 (QAO71_15715) - 3361744..3363444 (-) 1701 WP_280164853.1 bifunctional diguanylate cyclase/phosphodiesterase -
  QAO71_RS15720 (QAO71_15720) rep 3363577..3365583 (+) 2007 WP_074779765.1 DNA helicase Rep -
  QAO71_RS15725 (QAO71_15725) - 3365685..3365918 (-) 234 Protein_3074 c-type cytochrome -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54469.80 Da        Isoelectric Point: 7.6916

>NTDB_id=821147 QAO71_RS15710 WP_280164852.1 3360228..3361751(+) (comM) [Halopseudomonas sp. SMJS2]
MSLAIVHSRAKLGIQAPPVMVEVHLANGMPSLTLVGLPETAVRESKDRVRSALQNARLEFPSLKRITINLAPADLPKEGG
RFDLAIALGLLAASGQIPPASLERCEVLGELALSGELRPVQGVLPAALACRDNQRTLLLPRANAAEAALVQGVEIIAAEH
LLELCEHLRGEQLLPAVAAGSRPPPAGNLPDLRDVQGQAQAKRALIVAAAGSHNLLLFGPPGTGKTLLASRLPGILPALE
EEQALEVAAIQSVCGRGMLQHWPTRPFRAPHHGASAAALVGGGSQPRPGEISQAHHGVLFLDELPEFDRKVLEMLREPME
SGEIHIARAREQLTFPARFQLIAAMNPCPCGYQGDPSGRCRCSPEQVERYRSKLSGPLLDRIDLHLAMHNEAFSLTGQTV
GKPDSAEAGAAVAAARQRQLDRQGCLNAYLDLSDVRQHCALPTADASWLEKAVAQLGLSRRASHRVLKVARTLADLEQQP
MIGRPHLAEALQYRQLDRQPLDRLPLS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=821147 QAO71_RS15710 WP_280164852.1 3360228..3361751(+) (comM) [Halopseudomonas sp. SMJS2]
ATGTCCCTGGCGATTGTCCACAGCCGCGCCAAGCTGGGTATCCAGGCGCCACCGGTGATGGTGGAAGTACATCTGGCTAA
CGGCATGCCGAGCCTGACGCTGGTCGGACTGCCGGAAACCGCCGTACGGGAAAGCAAGGACCGGGTGCGCAGCGCCCTGC
AGAATGCCCGGCTGGAATTTCCCAGCCTCAAGCGCATCACCATCAACCTGGCGCCGGCCGACCTGCCGAAGGAAGGCGGG
CGCTTCGATCTCGCTATCGCCCTTGGATTACTGGCCGCCAGTGGCCAGATACCTCCCGCCAGCCTGGAACGCTGCGAAGT
GTTGGGCGAGCTGGCCCTCTCCGGCGAGCTGCGCCCGGTCCAGGGCGTGTTGCCTGCCGCTCTGGCCTGCCGGGATAACC
AGCGCACCCTGCTGCTGCCCCGCGCCAATGCGGCCGAGGCGGCGCTGGTGCAGGGGGTGGAGATCATCGCCGCCGAACAT
CTGCTGGAGCTATGCGAGCATCTGCGCGGCGAGCAGCTATTGCCAGCGGTGGCGGCCGGCTCACGGCCACCACCGGCCGG
CAACCTGCCCGATCTGCGCGACGTGCAGGGACAGGCCCAGGCCAAGCGCGCGCTGATCGTGGCCGCCGCCGGTTCCCATA
ATCTGTTGCTGTTCGGCCCACCGGGTACCGGCAAAACATTACTCGCCAGCCGCCTGCCCGGTATCCTGCCGGCGCTGGAG
GAAGAGCAAGCGCTGGAAGTGGCGGCGATCCAGTCCGTCTGCGGACGCGGCATGTTGCAGCATTGGCCGACCCGCCCGTT
CCGCGCGCCCCACCATGGGGCATCCGCCGCGGCGCTGGTGGGCGGCGGCAGTCAACCTCGGCCAGGGGAGATCAGCCAGG
CGCATCACGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAGATGCTGCGCGAGCCGATGGAG
TCGGGCGAGATCCATATCGCCCGGGCCCGCGAACAACTGACCTTTCCTGCGCGGTTTCAGCTGATCGCCGCGATGAATCC
GTGCCCCTGCGGTTATCAGGGCGACCCGTCCGGGCGCTGCCGCTGTTCACCGGAACAGGTGGAACGTTACCGCAGCAAAC
TGTCCGGCCCGCTGCTGGATCGTATCGATCTGCATCTGGCCATGCACAACGAGGCGTTCAGTCTCACCGGGCAGACCGTC
GGCAAACCCGACAGCGCCGAGGCTGGCGCTGCAGTCGCTGCCGCCCGTCAACGTCAGCTCGACCGTCAGGGCTGCCTGAA
TGCCTATCTGGATCTGTCCGATGTGCGCCAGCATTGCGCGCTGCCAACGGCCGACGCGAGCTGGCTGGAAAAGGCGGTGG
CGCAGCTGGGATTATCGCGGCGGGCCAGCCATCGCGTCCTGAAGGTCGCACGCACCTTGGCCGATCTCGAACAGCAGCCC
ATGATCGGGCGGCCGCACCTGGCCGAGGCATTGCAGTATCGGCAACTGGATCGCCAGCCGCTGGATCGCCTGCCACTCAG
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.746

99.408

0.564
  comM Vibrio campbellii strain DS40M4

55.976

99.014

0.554
  comM Glaesserella parasuis strain SC1401

53.32

100

0.538
  comM Haemophilus influenzae Rd KW20

52.86

100

0.529
  comM Legionella pneumophila str. Paris

49.803

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.803

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.438