Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N4838_RS04545 Genome accession   NZ_CP123251
Coordinates   1039134..1040201 (+) Length   355 a.a.
NCBI ID   WP_094962029.1    Uniprot ID   -
Organism   Providencia rettgeri strain YZLc5-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034134..1045201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4838_RS04525 (N4838_004535) aroL 1034522..1035019 (+) 498 WP_004264804.1 shikimate kinase AroL -
  N4838_RS04530 (N4838_004540) aas 1035160..1037307 (+) 2148 WP_262960641.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  N4838_RS04535 (N4838_004545) lplT 1037309..1038511 (+) 1203 WP_262960640.1 lysophospholipid transporter LplT -
  N4838_RS04540 (N4838_004550) pncC 1038526..1039029 (+) 504 WP_004264808.1 nicotinamide-nucleotide amidase -
  N4838_RS04545 (N4838_004555) recA 1039134..1040201 (+) 1068 WP_094962029.1 recombinase RecA Machinery gene
  N4838_RS04550 (N4838_004560) alaS 1040528..1043155 (+) 2628 WP_004264811.1 alanine--tRNA ligase -
  N4838_RS04555 (N4838_004565) csrA 1043383..1043568 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38184.50 Da        Isoelectric Point: 4.8129

>NTDB_id=820248 N4838_RS04545 WP_094962029.1 1039134..1040201(+) (recA) [Providencia rettgeri strain YZLc5-3]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTNYLKEHPEVAQEI
DTKLREMLLNHTGEFSSAATDFISDADEEETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=820248 N4838_RS04545 WP_094962029.1 1039134..1040201(+) (recA) [Providencia rettgeri strain YZLc5-3]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAGCAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACTATCTCAACAGGCTCCTTATCCCTTGATGTTGCATTGGGTG
CTGGTGGCTTGCCACTAGGTCGTATTGTTGAAATCTACGGCCCTGAATCTTCAGGTAAAACAACACTAACTCTGCAAGTT
ATTGCTGCAGCGCAACGTAGTGGTAAAACATGTGCTTTCATCGATGCTGAACACGCTTTAGACCCTATCTATGCTAAAAA
ATTAGGCGTTGATATCGATAACTTACTATGTTCTCAACCGGACACCGGTGAGCAAGCGCTAGAAATTTGTGATGCATTAA
CTCGCTCAGGTGCGGTTGATGTGATCATCGTTGACTCCGTTGCTGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCCTAGCTGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCTGGTAACTTAAAAACATCTAA
TACCTTACTGATCTTTATCAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAACCCAGAAACAACAACAGGTGGTA
ATGCATTAAAATTCTACGCATCTGTTCGTTTAGACATCCGCCGTATTGGTGCTGTTAAAAATGGCGAAGAAATCGTCGGT
AGTGAAACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCAGCACCGTTCAAACAAGCTGAATTCCAAATTTTGTATGGTGA
AGGTATTAATACCTTCGGCGAGCTAATTGACTTAGGTGTAAAACATAAGTTAATTGAAAAAGCAGGGGCTTGGTATAGTT
ATAACGGCGATAAAATTGGCCAAGGTAAAGCTAACTCAACAAATTATTTAAAAGAGCACCCTGAAGTCGCTCAAGAAATT
GATACCAAACTGCGTGAAATGTTATTGAATCACACTGGTGAATTTAGTAGTGCAGCAACAGACTTTATCAGTGATGCTGA
TGAAGAAGAAACACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.447

100

0.811
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.447

100

0.811
  recA Pseudomonas stutzeri DSM 10701

71.965

97.465

0.701
  recA Acinetobacter baumannii D1279779

69.801

98.873

0.69
  recA Acinetobacter baylyi ADP1

70.115

98.028

0.687
  recA Glaesserella parasuis strain SC1401

68.376

98.873

0.676
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae strain FA1090

65.439

99.437

0.651
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.606

0.62
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

58.807

99.155

0.583
  recA Helicobacter pylori 26695

62.997

92.113

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

89.859

0.572
  recA Streptococcus pneumoniae Rx1

62.539

90.986

0.569
  recA Streptococcus pneumoniae D39

62.539

90.986

0.569
  recA Streptococcus pneumoniae R6

62.539

90.986

0.569
  recA Streptococcus pneumoniae TIGR4

62.539

90.986

0.569
  recA Streptococcus mitis SK321

62.229

90.986

0.566
  recA Streptococcus mitis NCTC 12261

61.92

90.986

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.986

0.563
  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561
  recA Streptococcus mutans UA159

61.231

91.549

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.521

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.423

0.546