Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QEP69_RS21230 Genome accession   NZ_CP123209
Coordinates   4654170..4655663 (+) Length   497 a.a.
NCBI ID   WP_010210915.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. aesculi strain 1804     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4650064..4654031 4654170..4655663 flank 139


Gene organization within MGE regions


Location: 4650064..4655663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP69_RS21210 - 4650064..4651044 (-) 981 WP_057403839.1 IS5-like element ISPsy2 family transposase -
  QEP69_RS21215 - 4651306..4652283 (+) 978 WP_032701292.1 IS5 family transposase -
  QEP69_RS21220 - 4652520..4653497 (+) 978 WP_060406717.1 IS5 family transposase -
  QEP69_RS21225 - 4653666..4654073 (-) 408 Protein_4189 transposase -
  QEP69_RS21230 comM 4654170..4655663 (+) 1494 WP_010210915.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53057.91 Da        Isoelectric Point: 7.7173

>NTDB_id=820020 QEP69_RS21230 WP_010210915.1 4654170..4655663(+) (comM) [Pseudomonas amygdali pv. aesculi strain 1804]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVNHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSSEQVLRYRNKLSGPLLDRIDLHLTVAREATALNPDSTT
SENTASAAAVVAQARERQQRRQGCANAFLDLPGLREHCALSSVDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ITRSHLAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=820020 QEP69_RS21230 WP_010210915.1 4654170..4655663(+) (comM) [Pseudomonas amygdali pv. aesculi strain 1804]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAAGGCGCGGTGAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTTGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCTGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTTGAATGCCT
GGGCGAGCTGGCGCTGTCGGGAGCGATTCGGCCGATTCAGGGCGTGCTGCCTGCTGCGCTGGCGGCACGTGCAGCGGAGC
GGACGCTGATCATTCCGGCGGTGAACGCCGAAGAAGCCTGTCTGGCGTCGGGGCTGCGGGTGATTGCGGTGAATCACTTG
CTGGAGCTGGTTGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGCCTGCTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAGACCGCCGCGAAGCGTGCGTTGGTGATTGCCGCTGCGGGTGCGCACAACC
TGCTGTTCAGTGGGCCACCCGGCACCGGCAAGACATTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCGCCGCTGGATGAG
CACGAAGCGCTTGAAGTGGCGGCGATTCAGTCGGTTGCCAGCCAAGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
ACAGCCGCATCACTCGGCGTCCGGGCCGGCATTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAAATCACGTTGGCAC
ATCACGGCGTGCTGTTTCTCGATGAGCTGCCGGAGTTCGATCGCCGCGTGCTGGAGGTTTTGCGTGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGGGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTCCAACTTGTGGCAGCGATGAACCCATG
CCCCTGTGGATATCTGGGTGAGCCGACCGGGCGCTGCCGTTGTTCCTCCGAGCAGGTGCTGCGTTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGGATTGATCTGCACCTGACCGTCGCCCGCGAAGCCACAGCCCTCAACCCCGACTCGACCACC
AGTGAGAACACTGCAAGCGCGGCAGCGGTGGTTGCGCAGGCCAGAGAACGGCAGCAACGTCGTCAGGGCTGTGCCAATGC
CTTTCTCGACCTACCAGGGCTGCGCGAGCACTGCGCGCTGTCCAGTGTCGATGAGCGCTGGCTGGAGACGGCCTGCGAGC
GCCTGACTCTCTCATTACGTTCGGCGCATCGCCTGCTGAAAGTGGCGCGAACGCTGGCTGATCTGGAGCAGGTGGACGCG
ATCACTCGTAGCCATCTGGCCGAGGCGTTGCAGTACCGGCCTTCAACCAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

49.109

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.109

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459