Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS66_RS00995 Genome accession   NZ_CP123201
Coordinates   213886..215406 (-) Length   506 a.a.
NCBI ID   WP_069683008.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain GZfs     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 208886..220406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS66_RS00985 (QBS66_00985) hdfR 212527..213360 (-) 834 WP_087600399.1 HTH-type transcriptional regulator HdfR -
  QBS66_RS00990 (QBS66_00990) - 213468..213806 (+) 339 WP_004387280.1 DUF413 domain-containing protein -
  QBS66_RS00995 (QBS66_00995) comM 213886..215406 (-) 1521 WP_069683008.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS66_RS01000 (QBS66_01000) ilvL 215758..215856 (+) 99 WP_071601137.1 ilv operon leader peptide -
  QBS66_RS01005 (QBS66_01005) ilvG 215995..217641 (+) 1647 WP_069683007.1 acetolactate synthase 2 catalytic subunit -
  QBS66_RS01010 (QBS66_01010) ilvM 217638..217895 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  QBS66_RS01015 (QBS66_01015) - 217916..218845 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55004.33 Da        Isoelectric Point: 7.8108

>NTDB_id=819956 QBS66_RS00995 WP_069683008.1 213886..215406(-) (comM) [Cronobacter sakazakii strain GZfs]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAYHL
QEVCAFLEGKTQLEYAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVIVSRERQFARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQRI
SREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=819956 QBS66_RS00995 WP_069683008.1 213886..215406(-) (comM) [Cronobacter sakazakii strain GZfs]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTACCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATTGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTTATCATCTA
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATACGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGACATAACCTGC
TTTTTATTGGGCCCCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCAATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAACGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAACAAACGCTGCGCTATCTTGGACGGCTTTCCGGGC
CATTTCTAGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATTGTTAGCAGAGAGCGTCAGTTTGCACGTCAGGGAAAACTCAACGCCAT
GTTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACAATTGCAGATTGTGAACAGAAACAAAGGATT
AGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCCCATTTACAGAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.297

100

0.617
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Glaesserella parasuis strain SC1401

59.763

100

0.599
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

47.41

99.209

0.47
  comM Legionella pneumophila strain ERS1305867

47.41

99.209

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439