Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY72_RS13565 | Genome accession | NZ_CP123132 |
| Coordinates | 2741594..2742064 (+) | Length | 156 a.a. |
| NCBI ID | WP_024937184.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain GE-MSSA28 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2715375..2747763 | 2741594..2742064 | within | 0 |
Gene organization within MGE regions
Location: 2715375..2747763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY72_RS13390 (QAY72_13395) | groES | 2715375..2715659 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY72_RS13395 (QAY72_13400) | groL | 2715735..2717351 (+) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| QAY72_RS13400 (QAY72_13405) | - | 2717446..2717992 (-) | 547 | Protein_2598 | site-specific integrase | - |
| QAY72_RS13405 (QAY72_13410) | - | 2718053..2718265 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAY72_RS13410 (QAY72_13415) | - | 2718262..2718852 (+) | 591 | WP_001293058.1 | terminase small subunit | - |
| QAY72_RS13415 (QAY72_13420) | - | 2719170..2719606 (+) | 437 | Protein_2601 | hypothetical protein | - |
| QAY72_RS13420 (QAY72_13425) | - | 2719712..2720155 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAY72_RS13425 (QAY72_13430) | - | 2721008..2722315 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| QAY72_RS13430 (QAY72_13435) | - | 2722476..2723387 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAY72_RS13435 (QAY72_13440) | - | 2723449..2724294 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAY72_RS13440 (QAY72_13445) | - | 2724666..2725889 (-) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| QAY72_RS13445 (QAY72_13450) | lukH | 2726324..2727379 (+) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| QAY72_RS13450 (QAY72_13455) | lukG | 2727401..2728417 (+) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| QAY72_RS13455 (QAY72_13460) | sph | 2728655..2729479 (-) | 825 | Protein_2609 | sphingomyelin phosphodiesterase | - |
| QAY72_RS13460 (QAY72_13465) | - | 2729536..2730573 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAY72_RS13465 (QAY72_13470) | - | 2730764..2731477 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAY72_RS13470 (QAY72_13475) | - | 2731555..2731737 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| QAY72_RS13475 (QAY72_13480) | - | 2731937..2732122 (-) | 186 | WP_000100503.1 | hypothetical protein | - |
| QAY72_RS13480 (QAY72_13485) | - | 2732119..2732265 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAY72_RS13485 (QAY72_13490) | - | 2732339..2733193 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAY72_RS13490 (QAY72_13495) | - | 2733205..2733921 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAY72_RS13495 (QAY72_13500) | - | 2734085..2734327 (+) | 243 | WP_000639926.1 | DUF739 family protein | - |
| QAY72_RS13500 (QAY72_13505) | - | 2734340..2734600 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QAY72_RS13505 (QAY72_13510) | - | 2734624..2735162 (-) | 539 | Protein_2619 | hypothetical protein | - |
| QAY72_RS13510 (QAY72_13515) | - | 2735219..2735974 (+) | 756 | WP_001148342.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY72_RS13515 (QAY72_13520) | - | 2735990..2736187 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| QAY72_RS13520 (QAY72_13525) | - | 2736174..2736554 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| QAY72_RS13525 (QAY72_13530) | - | 2736609..2736929 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAY72_RS13530 (QAY72_13535) | - | 2736926..2737087 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| QAY72_RS13535 (QAY72_13540) | - | 2737182..2737484 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QAY72_RS13540 (QAY72_13545) | - | 2737489..2737749 (+) | 261 | WP_031824013.1 | DUF1108 family protein | - |
| QAY72_RS13545 (QAY72_13550) | - | 2737758..2738021 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY72_RS13550 (QAY72_13555) | - | 2738030..2739973 (+) | 1944 | WP_411888961.1 | AAA family ATPase | - |
| QAY72_RS13555 (QAY72_13560) | - | 2739975..2740895 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| QAY72_RS13560 (QAY72_13565) | - | 2740976..2741593 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| QAY72_RS13565 (QAY72_13570) | ssbA | 2741594..2742064 (+) | 471 | WP_024937184.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY72_RS13570 (QAY72_13575) | - | 2742094..2742978 (+) | 885 | WP_016047539.1 | DnaD domain protein | - |
| QAY72_RS13575 (QAY72_13580) | - | 2742985..2743203 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAY72_RS13580 (QAY72_13585) | - | 2743212..2743616 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY72_RS13585 (QAY72_13590) | - | 2743629..2743997 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY72_RS13590 (QAY72_13595) | - | 2744001..2744243 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| QAY72_RS13595 (QAY72_13600) | - | 2744308..2744757 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| QAY72_RS13600 (QAY72_13605) | - | 2744754..2745263 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| QAY72_RS13605 (QAY72_13610) | - | 2745260..2745670 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| QAY72_RS13610 (QAY72_13615) | - | 2745663..2746199 (+) | 537 | WP_001066444.1 | dUTPase | - |
| QAY72_RS13615 (QAY72_13620) | - | 2746236..2746442 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| QAY72_RS13620 (QAY72_13625) | rinB | 2746439..2746588 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAY72_RS13625 (QAY72_13630) | - | 2746588..2746788 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| QAY72_RS13630 (QAY72_13635) | - | 2746816..2747232 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| QAY72_RS13635 (QAY72_13640) | - | 2747464..2747763 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.56 Da Isoelectric Point: 4.9628
>NTDB_id=819294 QAY72_RS13565 WP_024937184.1 2741594..2742064(+) (ssbA) [Staphylococcus aureus strain GE-MSSA28]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819294 QAY72_RS13565 WP_024937184.1 2741594..2742064(+) (ssbA) [Staphylococcus aureus strain GE-MSSA28]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.497 |
100 |
0.641 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |