Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R4702_RS10230 Genome accession   NZ_CP137106
Coordinates   1992599..1993117 (+) Length   172 a.a.
NCBI ID   WP_235790885.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1987599..1998117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS10210 - 1988990..1989445 (+) 456 WP_001000318.1 HIT family protein -
  R4702_RS10215 - 1989950..1990399 (+) 450 WP_317809915.1 YhcH/YjgK/YiaL family protein -
  R4702_RS10220 - 1990444..1991490 (-) 1047 Protein_1980 IS630 family transposase -
  R4702_RS10225 - 1991746..1992552 (+) 807 Protein_1981 IS5 family transposase -
  R4702_RS10230 comA 1992599..1993117 (+) 519 WP_235790885.1 ATP-binding cassette domain-containing protein Regulator
  R4702_RS10235 - 1993160..1993330 (+) 171 WP_000711943.1 hypothetical protein -
  R4702_RS10240 gdhA 1993826..1995172 (-) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  R4702_RS10245 - 1995706..1996254 (+) 549 Protein_1985 transposase -
  R4702_RS10250 - 1996278..1996496 (+) 219 WP_000028151.1 hypothetical protein -
  R4702_RS10255 - 1996553..1996795 (-) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R4702_RS10260 - 1996891..1997826 (-) 936 WP_001862804.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.07 Da        Isoelectric Point: 5.7736

>NTDB_id=819211 R4702_RS10230 WP_235790885.1 1992599..1993117(+) (comA) [Streptococcus pneumoniae strain 16P4028]
MDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKNEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISE
MGSNISGGQRQRITLARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDADIIFVMKGGKIVE
SGNHKYLMDLGG

Nucleotide


Download         Length: 519 bp        

>NTDB_id=819211 R4702_RS10230 WP_235790885.1 1992599..1993117(+) (comA) [Streptococcus pneumoniae strain 16P4028]
ATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTCAAAATTTAGGAGT
AGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGAACGAAGTTACTTCACAAAAGA
TAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAG
ATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAACACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAAT
TTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTC
AAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAG
TCAGGAAATCATAAGTACTTAATGGATCTTGGTGGATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

42.775

100

0.43
  comA Streptococcus mitis NCTC 12261

43.275

99.419

0.43
  comA Streptococcus pneumoniae TIGR4

42.197

100

0.424
  comA Streptococcus mitis SK321

42.69

99.419

0.424
  comA Streptococcus pneumoniae R6

42.105

99.419

0.419
  comA Streptococcus pneumoniae Rx1

42.105

99.419

0.419
  comA Streptococcus pneumoniae D39

42.105

99.419

0.419
  comA/nlmT Streptococcus mutans UA159

41.765

98.837

0.413
  rcrQ Streptococcus mutans UA159

36.571

100

0.372