Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4709_RS00685 Genome accession   NZ_CP137102
Coordinates   142621..143574 (-) Length   317 a.a.
NCBI ID   WP_044791175.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137621..148574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS00660 - 138107..138202 (-) 96 Protein_132 IS630 family transposase -
  R4709_RS00665 - 138617..138958 (+) 342 Protein_133 transposase -
  R4709_RS00670 prsA 139077..140018 (-) 942 WP_000727933.1 peptidylprolyl isomerase PrsA -
  R4709_RS00675 - 140085..140798 (-) 714 WP_000230399.1 O-methyltransferase -
  R4709_RS00680 pepF 140800..142602 (-) 1803 WP_000244134.1 oligoendopeptidase F Regulator
  R4709_RS00685 coiA 142621..143574 (-) 954 WP_044791175.1 competence protein CoiA Machinery gene
  R4709_RS00690 tehB 143647..144507 (-) 861 WP_000413761.1 SAM-dependent methyltransferase TehB -
  R4709_RS00695 smpB 144523..144990 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4709_RS00700 rnr 144953..147307 (-) 2355 WP_050205457.1 ribonuclease R -
  R4709_RS00705 secG 147409..147642 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4709_RS00710 rpmG 147682..147831 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38285.94 Da        Isoelectric Point: 8.9763

>NTDB_id=818635 R4709_RS00685 WP_044791175.1 142621..143574(-) (coiA) [Streptococcus pneumoniae strain 16H3071-2]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSLLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQYFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=818635 R4709_RS00685 WP_044791175.1 142621..143574(-) (coiA) [Streptococcus pneumoniae strain 16H3071-2]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCTCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGATATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGTACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.369

100

0.994
  coiA Streptococcus pneumoniae Rx1

98.738

100

0.987
  coiA Streptococcus pneumoniae D39

98.738

100

0.987
  coiA Streptococcus pneumoniae R6

98.738

100

0.987
  coiA Streptococcus mitis NCTC 12261

89.274

100

0.893
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435