Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   R4703_RS00815 Genome accession   NZ_CP137100
Coordinates   160609..160950 (-) Length   113 a.a.
NCBI ID   WP_231292389.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 155609..165950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS00785 - 156043..156285 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R4703_RS00790 - 156342..156830 (-) 489 WP_001835775.1 hypothetical protein -
  R4703_RS00795 - 156937..157608 (-) 672 Protein_156 Dyp-type peroxidase domain-containing protein -
  R4703_RS00800 - 157578..158244 (-) 667 Protein_157 winged helix-turn-helix domain-containing protein -
  R4703_RS00805 gdhA 158584..159930 (+) 1347 WP_050201168.1 NADP-specific glutamate dehydrogenase -
  R4703_RS00810 - 160426..160596 (-) 171 WP_000711942.1 hypothetical protein -
  R4703_RS00815 comA/nlmT 160609..160950 (-) 342 WP_231292389.1 ATP-binding cassette domain-containing protein Regulator
  R4703_RS11675 comA 161013..161177 (-) 165 WP_109701449.1 hypothetical protein Regulator
  R4703_RS00820 - 161203..161712 (-) 510 Protein_162 transposase -
  R4703_RS00825 - 161721..162435 (+) 715 Protein_163 IS630 family transposase -
  R4703_RS00830 - 162669..163121 (-) 453 Protein_164 hypothetical protein -
  R4703_RS00835 - 163123..163410 (-) 288 WP_000869754.1 hypothetical protein -
  R4703_RS00840 - 163995..165346 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  R4703_RS00845 - 165446..165844 (-) 399 Protein_167 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12560.61 Da        Isoelectric Point: 9.7118

>NTDB_id=818392 R4703_RS00815 WP_231292389.1 160609..160950(-) (comA/nlmT) [Streptococcus pneumoniae strain LYP]
MPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDADI
IVVMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 342 bp        

>NTDB_id=818392 R4703_RS00815 WP_231292389.1 160609..160950(-) (comA/nlmT) [Streptococcus pneumoniae strain LYP]
ATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGC
ACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAA
TAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATT
ATTGTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTACTACAG
CTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(6-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

97.345

0.478
  comA Streptococcus gordonii str. Challis substr. CH1

49.074

95.575

0.469
  comA Streptococcus mitis NCTC 12261

49.074

95.575

0.469
  comA Streptococcus mitis SK321

49.074

95.575

0.469
  comA Streptococcus pneumoniae D39

48.148

95.575

0.46
  comA Streptococcus pneumoniae TIGR4

48.148

95.575

0.46
  comA Streptococcus pneumoniae Rx1

48.148

95.575

0.46
  comA Streptococcus pneumoniae R6

48.148

95.575

0.46
  rcrQ Streptococcus mutans UA159

42.105

100

0.425
  rcrP Streptococcus mutans UA159

44.33

85.841

0.381