Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS64_RS15120 Genome accession   NZ_AP023235
Coordinates   3118500..3119129 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YJ6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3113500..3124129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS64_RS15105 helD 3113742..3115796 (-) 2055 WP_001295354.1 DNA helicase IV -
  HXS64_RS15110 yccF 3115919..3116365 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HXS64_RS15115 yccS 3116375..3118537 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HXS64_RS15120 sxy/tfoX 3118500..3119129 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HXS64_RS15125 sulA 3119348..3119857 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HXS64_RS15130 ompA 3120214..3121254 (+) 1041 WP_001400178.1 porin OmpA -
  HXS64_RS15135 matP 3121330..3121782 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HXS64_RS15140 ycbZ 3121968..3123728 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81794 HXS64_RS15120 WP_000839153.1 3118500..3119129(-) (sxy/tfoX) [Escherichia coli strain YJ6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81794 HXS64_RS15120 WP_000839153.1 3118500..3119129(-) (sxy/tfoX) [Escherichia coli strain YJ6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment