Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QDU35_RS03765 Genome accession   NZ_CP122987
Coordinates   760915..761235 (-) Length   106 a.a.
NCBI ID   WP_005318073.1    Uniprot ID   A4SJ96
Organism   Aeromonas salmonicida strain JNG     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755915..766235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDU35_RS03745 (QDU35_03745) - 756199..756897 (-) 699 WP_005318084.1 DnaT-like ssDNA-binding domain-containing protein -
  QDU35_RS03750 (QDU35_03750) - 757251..758222 (+) 972 WP_011898383.1 response regulator -
  QDU35_RS03755 (QDU35_03755) - 758298..759695 (-) 1398 WP_017412884.1 peptide MFS transporter -
  QDU35_RS03760 (QDU35_03760) galU 759909..760820 (-) 912 WP_005318075.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QDU35_RS03765 (QDU35_03765) comEA 760915..761235 (-) 321 WP_005318073.1 ComEA family DNA-binding protein Machinery gene
  QDU35_RS03770 (QDU35_03770) cysQ 761403..762173 (+) 771 WP_005318069.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QDU35_RS03775 (QDU35_03775) - 762255..762551 (-) 297 WP_005318066.1 YciI family protein -
  QDU35_RS03780 (QDU35_03780) - 762578..763129 (-) 552 WP_005318063.1 septation protein A -
  QDU35_RS03785 (QDU35_03785) - 763215..764750 (-) 1536 WP_034283547.1 pyridoxal-dependent decarboxylase -
  QDU35_RS03790 (QDU35_03790) - 764975..765610 (+) 636 WP_017412882.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11222.15 Da        Isoelectric Point: 10.0215

>NTDB_id=817709 QDU35_RS03765 WP_005318073.1 760915..761235(-) (comEA) [Aeromonas salmonicida strain JNG]
MNYKILTATLLLSCLPLLSQPLLAADKPAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=817709 QDU35_RS03765 WP_005318073.1 760915..761235(-) (comEA) [Aeromonas salmonicida strain JNG]
ATGAACTACAAAATCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTTTGCTGGCCGCCGACAA
GCCGGCTGCCAAGCCAGCGACCACGGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTCAGAAACAGGGCAAGTTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCCACTCTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4SJ96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50

100

0.519
  comEA Vibrio cholerae strain A1552

50

100

0.519
  comEA Vibrio parahaemolyticus RIMD 2210633

46.392

91.509

0.425
  comE1/comEA Haemophilus influenzae Rd KW20

42.453

100

0.425
  comEA/comE1 Glaesserella parasuis strain SC1401

61.905

59.434

0.368