Detailed information NTG0817366

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: R0Q54_RS13380
• Genome accession: NZ_CP136992
• Coordinates: 2510456..2511601 (+)
• Length: 381 a.a.
• NCBI ID: WP_155118109.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain J46
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2505456..2516601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R0Q54_RS13355 (R0Q54_13355)	yddF	2505517..2505843 (+)	327	WP_069964000.1	YddF family protein	-
R0Q54_RS13360 (R0Q54_13360)	-	2505847..2508282 (+)	2436	WP_080478388.1	CD3337/EF1877 family mobilome membrane protein	-
R0Q54_RS13365 (R0Q54_13365)	-	2508279..2509268 (+)	990	WP_259607224.1	lysozyme family protein	-
R0Q54_RS13370 (R0Q54_13370)	-	2509283..2509789 (+)	507	WP_069964002.1	hypothetical protein	-
R0Q54_RS13375 (R0Q54_13375)	-	2509852..2510238 (+)	387	WP_396127098.1	cystatin-like fold lipoprotein	-
R0Q54_RS13380 (R0Q54_13380)	rapF	2510456..2511601 (+)	1146	WP_155118109.1	tetratricopeptide repeat protein	Regulator
R0Q54_RS13385 (R0Q54_13385)	-	2511760..2512851 (-)	1092	WP_069964004.1	DNA cytosine methyltransferase	-
R0Q54_RS13390 (R0Q54_13390)	-	2512906..2514243 (-)	1338	WP_069964005.1	LlaJI family restriction endonuclease	-
R0Q54_RS13395 (R0Q54_13395)	-	2514240..2515970 (-)	1731	WP_069964006.1	AAA family ATPase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45266.84 Da
• Isoelectric Point: 5.4113

>NTDB_id=817366 R0Q54_RS13380 WP_155118109.1 2510456..2511601(+) (rapF) [Bacillus subtilis strain J46]
MEPVFLMKGKIPYDLVTKKLNAWYTAIKNDRVEQAENIKQEVEMELKSIEENQDALLYYQLLEFRHEIMLSYMESKRIDN
LTSTYETIKEIEEQGQLTGMLEYYFYFFKGMYEFRRKELTTAISAYRVAETKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALNIFKDYDEYAVQTIRCQFIVAGNYIDSMEFEKALNVFFNSLDVAKSINSDHLIGMSHINIGICFDELKQY
EDAATHLEISLKLLEKKNNSFLPKALFILTHVKAKQNDLKASLTYFKKGRFYSKINKDLEYDAKFKILEGLYFSNGEYQL
IEDAFAYLESKKMFADVENYAIDVGDFFHERGKLLLSNEYYRMSIEARRKIKKGEIKHENL

Nucleotide

• Length: 1146 bp

>NTDB_id=817366 R0Q54_RS13380 WP_155118109.1 2510456..2511601(+) (rapF) [Bacillus subtilis strain J46]
GTGGAGCCGGTTTTCTTGATGAAGGGGAAGATTCCATATGATCTTGTTACTAAAAAATTAAATGCTTGGTATACAGCGAT
CAAAAACGATCGTGTGGAACAAGCGGAAAATATTAAACAAGAAGTAGAAATGGAGCTAAAAAGTATTGAAGAAAATCAAG
ATGCTTTGTTGTATTATCAGTTATTAGAATTTAGACATGAAATAATGTTGAGTTATATGGAATCAAAAAGAATTGACAAT
CTGACAAGTACTTATGAAACAATTAAGGAGATAGAAGAGCAAGGGCAATTGACAGGTATGCTTGAATATTATTTCTATTT
TTTTAAGGGGATGTATGAGTTCAGGAGAAAAGAGTTAACAACAGCGATCAGTGCTTACAGAGTAGCTGAAACTAAGTTAT
CGGAGGTAGAGGATGAGATAGAGAAAGCTGAATTTTTCTTTAAGGTGTCGTATGTTTACTATTATATGAAGCAAACTTAC
TTCTCAATGAATTATGCAAATCGAGCACTTAACATATTTAAAGATTATGATGAATATGCTGTTCAAACAATTCGGTGTCA
GTTTATTGTTGCAGGCAATTATATTGATTCGATGGAATTTGAAAAGGCCCTCAATGTCTTTTTTAATTCACTTGACGTTG
CAAAAAGTATAAATAGTGATCATCTAATTGGGATGTCTCATATAAATATTGGCATCTGTTTTGATGAGTTAAAGCAATAT
GAAGATGCAGCGACTCATTTAGAAATATCCTTGAAATTGCTTGAAAAGAAAAATAATTCATTTTTACCAAAGGCTTTGTT
TATTTTGACACATGTGAAGGCAAAACAGAACGATTTAAAAGCATCTTTAACATATTTTAAAAAAGGTCGATTCTATTCAA
AAATAAATAAAGATCTTGAATATGATGCAAAATTTAAAATCTTAGAAGGACTTTACTTTTCTAATGGTGAATATCAACTC
ATAGAAGATGCATTTGCATATCTTGAATCGAAAAAGATGTTTGCTGATGTTGAAAATTATGCAATTGATGTGGGTGATTT
TTTTCATGAACGAGGAAAATTATTACTGTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGTAAAATCAAAAAAG
GAGAGATTAAACATGAAAATTTGTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (10-70)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.133	98.425	0.375
rapC	Bacillus subtilis subsp. subtilis str. 168	37.234	98.688	0.367