Detailed information NTG0817364

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: QAP01_RS07110
• Genome accession: NZ_CP122950
• Coordinates: 1496250..1497218 (-)
• Length: 322 a.a.
• NCBI ID: WP_286498181.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS28-1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1491250..1502218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP01_RS07090 (QAP01_07090)	-	1491528..1492460 (-)	933	WP_286498177.1	GDP-L-fucose synthase	-
QAP01_RS07095 (QAP01_07095)	gmd	1492453..1493598 (-)	1146	WP_286498178.1	GDP-mannose 4,6-dehydratase	-
QAP01_RS07100 (QAP01_07100)	-	1493639..1495051 (-)	1413	WP_286498179.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP01_RS07105 (QAP01_07105)	comB10	1495121..1496257 (-)	1137	WP_286498180.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP01_RS07110 (QAP01_07110)	comB9	1496250..1497218 (-)	969	WP_286498181.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP01_RS07115 (QAP01_07115)	comB8	1497218..1497961 (-)	744	WP_001208392.1	virB8 family protein	Machinery gene
QAP01_RS07120 (QAP01_07120)	comB7	1497958..1498071 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
QAP01_RS07125 (QAP01_07125)	comB6	1498087..1499142 (-)	1056	WP_286498805.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP01_RS07130 (QAP01_07130)	-	1499150..1500145 (-)	996	WP_286498182.1	PDZ domain-containing protein	-
QAP01_RS07135 (QAP01_07135)	-	1500145..1500447 (-)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
QAP01_RS07140 (QAP01_07140)	panD	1500450..1500803 (-)	354	WP_100950247.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 322 a.a.
• Molecular weight: 37093.80 Da
• Isoelectric Point: 9.5535

>NTDB_id=817364 QAP01_RS07110 WP_286498181.1 1496250..1497218(-) (comB9) [Helicobacter pylori strain BS28-1]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENALENAPTNNKPLKEEKEETKEKEEEIITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGICSKK
SKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRFVKKAK
DE

Nucleotide

• Length: 969 bp

>NTDB_id=817364 QAP01_RS07110 WP_286498181.1 1496250..1497218(-) (comB9) [Helicobacter pylori strain BS28-1]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGATTATAACTATTGGCGATAACACCAATGCGATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAA
TCCAAGCTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAGATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACATTA
TAGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTCAAAAAGGCTAAA
GATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	97.239	100	0.984