Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QAP01_RS07115 Genome accession   NZ_CP122950
Coordinates   1497218..1497961 (-) Length   247 a.a.
NCBI ID   WP_001208392.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492218..1502961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS07095 (QAP01_07095) gmd 1492453..1493598 (-) 1146 WP_286498178.1 GDP-mannose 4,6-dehydratase -
  QAP01_RS07100 (QAP01_07100) - 1493639..1495051 (-) 1413 WP_286498179.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAP01_RS07105 (QAP01_07105) comB10 1495121..1496257 (-) 1137 WP_286498180.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP01_RS07110 (QAP01_07110) comB9 1496250..1497218 (-) 969 WP_286498181.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAP01_RS07115 (QAP01_07115) comB8 1497218..1497961 (-) 744 WP_001208392.1 virB8 family protein Machinery gene
  QAP01_RS07120 (QAP01_07120) comB7 1497958..1498071 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  QAP01_RS07125 (QAP01_07125) comB6 1498087..1499142 (-) 1056 WP_286498805.1 P-type conjugative transfer protein TrbL Machinery gene
  QAP01_RS07130 (QAP01_07130) - 1499150..1500145 (-) 996 WP_286498182.1 PDZ domain-containing protein -
  QAP01_RS07135 (QAP01_07135) - 1500145..1500447 (-) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  QAP01_RS07140 (QAP01_07140) panD 1500450..1500803 (-) 354 WP_100950247.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28740.98 Da        Isoelectric Point: 8.9604

>NTDB_id=817365 QAP01_RS07115 WP_001208392.1 1497218..1497961(-) (comB8) [Helicobacter pylori strain BS28-1]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=817365 QAP01_RS07115 WP_001208392.1 1497218..1497961(-) (comB8) [Helicobacter pylori strain BS28-1]
ATGAGAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATTGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTATGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.381

100

0.984