Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   QAP01_RS07105 Genome accession   NZ_CP122950
Coordinates   1495121..1496257 (-) Length   378 a.a.
NCBI ID   WP_286498180.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490121..1501257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS07085 (QAP01_07085) hypE 1490225..1491223 (+) 999 WP_286498176.1 hydrogenase expression/formation protein HypE -
  QAP01_RS07090 (QAP01_07090) - 1491528..1492460 (-) 933 WP_286498177.1 GDP-L-fucose synthase -
  QAP01_RS07095 (QAP01_07095) gmd 1492453..1493598 (-) 1146 WP_286498178.1 GDP-mannose 4,6-dehydratase -
  QAP01_RS07100 (QAP01_07100) - 1493639..1495051 (-) 1413 WP_286498179.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAP01_RS07105 (QAP01_07105) comB10 1495121..1496257 (-) 1137 WP_286498180.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP01_RS07110 (QAP01_07110) comB9 1496250..1497218 (-) 969 WP_286498181.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAP01_RS07115 (QAP01_07115) comB8 1497218..1497961 (-) 744 WP_001208392.1 virB8 family protein Machinery gene
  QAP01_RS07120 (QAP01_07120) comB7 1497958..1498071 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  QAP01_RS07125 (QAP01_07125) comB6 1498087..1499142 (-) 1056 WP_286498805.1 P-type conjugative transfer protein TrbL Machinery gene
  QAP01_RS07130 (QAP01_07130) - 1499150..1500145 (-) 996 WP_286498182.1 PDZ domain-containing protein -
  QAP01_RS07135 (QAP01_07135) - 1500145..1500447 (-) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  QAP01_RS07140 (QAP01_07140) panD 1500450..1500803 (-) 354 WP_100950247.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42194.80 Da        Isoelectric Point: 9.9637

>NTDB_id=817363 QAP01_RS07105 WP_286498180.1 1495121..1496257(-) (comB10) [Helicobacter pylori strain BS28-1]
MNKWLKGAIVFMGGFATITTISLVYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDSKTKPTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=817363 QAP01_RS07105 WP_286498180.1 1495121..1496257(-) (comB10) [Helicobacter pylori strain BS28-1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATGGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTCAAAAAC
AAAACCAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACTTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCCCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCAGACATTAAAGGTTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTATTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTATTCATTTCGCCTAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

97.619

100

0.976